Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02455 ATGGAGTGGGATAGTAATTCTGATCTTAGCGGTGATGAAGACGACGCCGTTTCGTCGTCGTTCCTTTTAAACGATGACGTTGGACCGCTTCCGTTTCCGGTTCTGCAAACGGCGCCGTGCGGGTTTGTTGTCACCGACGCGATCGATCCGGATCATCCTATTATATATGTCAACGCTGTTTTTGAGATGCTTACTGGTTATCGAGCTGAAGAAGTTCTCGGTCGTAACTGGTCTCTGACCATCTGTATCCACTGTTACTTTTTTTGTTCTCCTGAATTATTTTGCAGCCGTTTCTTGCAGTGTCGAGGTCCATTCGCTAAGAGAAGGCATCCATTGGTGGACTCATCAGTAATTTCAGAAATTAGAAAATGCATTGACGAAGGGGTAGAGTTTCAAGGTGAGTTGCTGAACTTCAGGAAAGATGGATCTCCACTTATGAACAGACTCCGTCTGACACCTATATTTGGAGAAGATGATGAAATAACCCATGTCATTGGAATTCAGTTATTCACAGAGGCAAACATTGATCTTGGTCCTGTTCTCGGTTCTACAATTAAGGAATCTGTTAAATCATCTGGTCGGTTTCAGTCTGTGTTATCCTCACTGCAACCTCTTCCAGTGGGGGACCGGAATGTGACCCGTGGAATTTGTGGGTTATTTCAATTAAGTGACGAGGTACTGTCTCTCAAAATACTTGCTCGCTTAACTCCAAGAGATATTGCATCAGTTAGTTCTGTTTGTACGCGATTATATGAAGTAACAAGAAACGAAGACCTTTGGAGGATGGTATGCCAAAATGCATGGGGTAGTGAAACTACCCGTGTTTTGGAGACTGTTCCTGGTGCAAGGAGGCTTGGATGGGGTCGACTAGCAAGGGAACTGACCACTCTTGAAGCAGCAGCATGGAGGAAACTGACTGTTGGAGGTGGTGTTGAACCGTCACGCTGCAATTTTAGTGCTTGTGCAGTTGGGAATAGAGTTGTTCTATTTGGTGGTGAAGGTGTTAATATGCAACCCATGAATGACACCTTTGTATTGGATCTCAATTCTAATAATCCCGAATGGCAACATGTCCAGGTTAGCTCTCCTCCCCCCGGTCGGTGGGGCCATACACTTTCTTGTGTTAATGGTTCTCGTTTAGTTGTATTTGGAGGCTGTGGAACACAGGGTTTGCTTAATGATGTGTTTGTTCTGGACTTGGATGCAACCCCTCCAACTTGGCGTGAAATTTCGGGATTAGCACCTCCACTTCCAAGATCATGGCATAGCTCTTGTACTCTTGATGGTACTAAGTTGATAGTTTCTGGTGGCTGTGCTGATTCTGGAGTACTTTTGAGTGATACTTTTCTCCTTGATATGTCAATGGAAAACCCTATCTGGAGGGAGATACCAGTGACATGGACACCACCTTCGCGTCTGGGCCATACACTATCTGTTTATGGTGGTAGGAAAATTCTGATGTTTGGGGGTCTGGCCAAGAGTGGTCCCCTGCGTTTCCGGTCAAGCGATGTGTTTACTATGGATTTAAGCGAGGATGAACCATGTTGGAGATGTGTAACGGGGAGTGGAATGCCTGGTGCTGGCAATCCTGGAGGCATAGCTCCTCCTCCTAGACTTGATCACGTGGCTGTTAGCCTTCCAGGTGGTAGAATTTTGATTTTTGGGGGTTCTGTTGCAGGCCTTCATTCTGCCTCCCAGCTTTACATACTTGATCCAACCGATGAGAAGCCTACATGGAGAATCTTAAATGTACCTGGGCGCCCTCCAAGATTTGCTTGGGGACATAGTACATGTGTTGTTGGGGGGACAAGAGCTATTGTTCTGGGTGGTCAAACCGGGGATGAATGGATGCTAAGTGAACTGCATGAACTTTCCCTGGCAAATTCTGTCATCTAG 1896 0.4604 MEWDSNSDLSGDEDDAVSSSFLLNDDVGPLPFPVLQTAPCGFVVTDAIDPDHPIIYVNAVFEMLTGYRAEEVLGRNWSLTICIHCYFFCSPELFCSRFLQCRGPFAKRRHPLVDSSVISEIRKCIDEGVEFQGELLNFRKDGSPLMNRLRLTPIFGEDDEITHVIGIQLFTEANIDLGPVLGSTIKESVKSSGRFQSVLSSLQPLPVGDRNVTRGICGLFQLSDEVLSLKILARLTPRDIASVSSVCTRLYEVTRNEDLWRMVCQNAWGSETTRVLETVPGARRLGWGRLARELTTLEAAAWRKLTVGGGVEPSRCNFSACAVGNRVVLFGGEGVNMQPMNDTFVLDLNSNNPEWQHVQVSSPPPGRWGHTLSCVNGSRLVVFGGCGTQGLLNDVFVLDLDATPPTWREISGLAPPLPRSWHSSCTLDGTKLIVSGGCADSGVLLSDTFLLDMSMENPIWREIPVTWTPPSRLGHTLSVYGGRKILMFGGLAKSGPLRFRSSDVFTMDLSEDEPCWRCVTGSGMPGAGNPGGIAPPPRLDHVAVSLPGGRILIFGGSVAGLHSASQLYILDPTDEKPTWRILNVPGRPPRFAWGHSTCVVGGTRAIVLGGQTGDEWMLSELHELSLANSVI 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02455 631 SUPERFAMILY Kelch motif 302 520 IPR015915 GO:0005515
Vivi4g02455 631 FunFam Adagio protein 1 32 179 - -
Vivi4g02455 631 SUPERFAMILY PYP-like sensor domain (PAS domain) 38 168 IPR035965 -
Vivi4g02455 631 Gene3D PAS domain 32 179 - -
Vivi4g02455 631 Gene3D - 446 630 IPR015915 GO:0005515
Vivi4g02455 631 CDD PAS 38 167 IPR000014 -
Vivi4g02455 631 PANTHER BACTERIOOPSIN TRANSCRIPTIONAL ACTIVATOR 30 627 - -
Vivi4g02455 631 SUPERFAMILY F-box domain 211 280 IPR036047 GO:0005515
Vivi4g02455 631 ProSiteProfiles PAS repeat profile. 47 76 IPR000014 -
Vivi4g02455 631 FunFam Adagio protein 1 216 263 - -
Vivi4g02455 631 FunFam Putative LOV domain-containing protein 497 630 - -
Vivi4g02455 631 Pfam Galactose oxidase, central domain 377 426 - -
Vivi4g02455 631 CDD F-box_AtADO-like 218 264 - -
Vivi4g02455 631 NCBIfam PAS domain S-box protein 48 78 IPR000014 -
Vivi4g02455 631 Pfam PAS domain 39 167 IPR000014 -
Vivi4g02455 631 Gene3D - 218 263 - -
Vivi4g02455 631 ProSiteProfiles SRCR domain profile. 233 276 IPR001190 GO:0005044|GO:0016020
Vivi4g02455 631 FunFam Putative LOV domain-containing protein 292 496 - -
Vivi4g02455 631 Gene3D - 292 445 IPR015915 GO:0005515
Vivi4g02455 631 Pfam F-box-like 227 265 IPR001810 GO:0005515
Vivi4g02455 631 Pfam Kelch motif 539 586 IPR011498 GO:0005515
Vivi4g02455 631 Pfam Kelch motif 472 523 IPR011498 GO:0005515
Vivi4g02455 631 Pfam Galactose oxidase, central domain 315 365 - -
Vivi4g02455 631 SUPERFAMILY Kelch motif 468 624 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02455 Vivi-Chr4 120522687 120531553 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02455 34 169 AGC Kinase Gene Family AT5G58140 33.824 2.67e-15 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02455 K12115 - gmx:100802828 1126.69