Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02416 ATGACAGAGATAAAGCATTTCCAATTTCATCATGTTGAATATTTGGTTTTGAAAATGCTTAGTATTTACATTGGTAGTGACAAAGCTGGTTGTTATTGCATCGCAATTGACCCAACAGGCAGAGAAAAGACACAAATTGCTAAGGTTTCTCCAAAGCATGTCTGCAAATATTGGATGAATGGCGATTGTGTTCGTGGTGAACATTGCCGGAATTTACATTCCTGGTTTTATGGTGATGGCTTTGCCACATTAGTAAAGCTTCAAGGACACAAGAAGCTTGTCATTGGAATTGCACTTCCACATGGATCAAACAAACTTTATTCTGGCAGCACCGATGGGACACTTCGGACATGGGACTGTGTTACTGGTCAATGTACTAATTTGACGAATCTTGGTGCTGAAGCTACCTCTTTGATCAGTGAGGGCCCGTGGATTTTTGTTGGTCTGCCTAACATTGTCAAGGCATGGAATATGCAAACTGCTTCACATTTAACTCTCGATGGACCTAAGGGACGAGTCCTTGCCATGGTTGTTGGCAATGATACACTCTTAGCTGGAGCAGAGGCAGTTCTAAATCCAATTCCCCTTTTGAACTGGTTGCATCACTACGCGGACACACTAAATCTGTTGTTTGCCTGGCTGTTGGATGTAACAAGATGTTGTACTCAAGATCCAAGGATCAAAGCATCAAGGTTTGGGACCTAG 705 0.4241 MTEIKHFQFHHVEYLVLKMLSIYIGSDKAGCYCIAIDPTGREKTQIAKVSPKHVCKYWMNGDCVRGEHCRNLHSWFYGDGFATLVKLQGHKKLVIGIALPHGSNKLYSGSTDGTLRTWDCVTGQCTNLTNLGAEATSLISEGPWIFVGLPNIVKAWNMQTASHLTLDGPKGRVLAMVVGNDTLLAGAEAVLNPIPLLNWLHHYADTLNLLFAWLLDVTRCCTQDPRIKASRFGT 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02416 234 SUPERFAMILY WD40 repeat-like 79 185 IPR036322 GO:0005515
Vivi4g02416 234 PANTHER - 49 213 IPR044715 -
Vivi4g02416 234 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 87 119 - -
Vivi4g02416 234 SMART WD40_4 80 119 IPR001680 GO:0005515
Vivi4g02416 234 Gene3D - 24 189 IPR015943 GO:0005515
Vivi4g02416 234 SUPERFAMILY CCCH zinc finger 52 74 IPR036855 GO:0046872
Vivi4g02416 234 ProSiteProfiles Zinc finger C3H1-type profile. 54 76 IPR000571 GO:0046872
Vivi4g02416 234 ProSiteProfiles Trp-Asp (WD) repeats profile. 87 128 IPR001680 GO:0005515
Vivi4g02416 234 SMART c3hfinal6 50 75 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02416 Vivi-Chr4 118565563 118567517 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vivi4g02416 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02416 - - vvo:131597736 497.664