Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02365 ATGCGGGATACTGAGAAGTCAAATAATCGAGGATCTACAAAAGCCGGTAACTCAAAGGAACATATCAAGTTAAAGGTAGATTCACCGCGATTCAAAAGAAGTAGCTCGAAAAGCCAAGAGAAGAAACGGAAACTGAAATCAAAATCTCATAAACTCAGAGACTCGGCAAATGCGTCGGAGAAAACAGCTATTGATTCTTCTGTCAAGGGGCCGAACAAGAATACTTCAAATAAAAGATTGATTATTAGGCAAAAGCTACATAAAACTGATAGGAATTCAAAACAGGTTCAGCCTACTGTAAAGATACAAGGAGGAAAAAATTCTCCGAATAATGATAGGGAAAACGAGAAAGATGTTGATCAAGAGACAAATATTCAAAAGCGTAAGAGAAGAAGAAGAAAAAAGAAAAGAGAAAGACTTAATGTGGAAATTGACGACACTTCACGCCTTCAGAGAAGAACAAGGAATCTGTTAATTAGAATGAAGCTAGAGCAGAACCTTATTGATGCTTACTCCGGAGAAGGTTGGAAAGGTCATAGTCGAGAGAAGATTAGGCCTGAAATGGAGCTACAAAGAGCAAAGAAGCAGATTATAAAATGCAAGCTTGGTATCCGTGACGCCATTCGCCAGCTAGATTCTCTAAGTTCAGTTGGTAGCATTGAAGGTTCTGCTATTGCTACAGATGGATCTGTTTATCACGAACATATATTCTGTGCGAATTGCAAGATGCGTGAAGCTTTTCCAGATAATGATATTATACTCTGCGACGGCACATGCAATCGCGCGTTTCACCAAAGGTGTCTTGATCCTCCTTTGGATACTGAAAACATACCTCCCGGAGACCAAGGCTGGTTTTGCAAGTTTTGTGAATGTAAGATAGAAATACTCGAGGCAACAAACGCGCATCTCGGGACTCGTTTCTCCTTAGACAGTACTTGGCAGGATATATTCAAGGAAGAAGCTGCTATTCCTGATGGTGACACAGGATTATTGAATCAAGAAGAAGAATGGCCCTCAGATGATCCTGAAGACGATGACTATAATCCAGAGATGAAAGAAGATAGCCACGGTGGCAACAACACAGATGGAAATGATGATAACGCATCTGATGATTCGAGTAGTTCTGGTAGTATGTGGTCATTAAATGGAGAATGTTCTCTGTTAGATGAAGGCCTTGAATATTATTCTGTTAGTCATGGCCGCATAGATTCCGATGAATCCGGCGAAATTGCGTGTGGTCGTAGGCAGCGTACAGCTGTTGACTACAGGAAACTTTATGATGAAATGTTTGGGAAGGATGCTCATTATGAACAAATGAGTGAAGACGAAGACTGGGGTCCGGGAAAAAAACCGCGAACAGAAAAGGAGTCTGACGCTGTTAATACACTTATGACTCTGCATGAGATTGAAAACAAACATCAGAATGATGAGAACAATGTTAGAATACGAGGGAATTCTTCTGGCATAAAAAGACCTTGCTTCAGGATTCCGCATGATGCTGTTGAGAAGCTTCGCCAAGTTTTTGCAGAGAATGAGCTTCCTCCTAAATCCGTAAAGGACGCCCTTTCGAAAGAGCTGGGACTTGACGCTGCAAAGGTTAACAAATGGTTCAAAAATGCACGTTACTCGGCACTTAAAACTCGAAAGTATCGGGAAGGAGGAAAACAGCTGCAGAGTTTCACTTCTAAGTCCTCAAAGGATTGTACATCCCAACAGGTGCAGGAAGATGAGATTTTGAAACCGAAGGTCAAGAAAATTACCGTGATTCGTTCCGTGAAGAAGTGTGAAAATGTTACCGGCAAAGAGAAAACAAAGGCATCTAGCAGTCTTTTGAAGAAAAAGAAACCAGAAGTACCTCCACCCTCGAGAGAAAACGGCAACGAGGATTCGACGGAAGACAATGGCGATGTAAGCTTGATGAAACTATTGAAAGAAAGGAAAAAGAAGGTAACATTTGCATTTGAGAGAGGCTCTAAGGAAGCAGAGTTGGAGCTTGAAAGACTGACCAAATTGAAGATGAAAGTAGATAGATTGAAGCAAAGTTTAACTCAAGTTCAAAATTACAGATCAAAGGGTTCAGAGAAAGAACCTAATCTGAATGAGCCATCTATTGTTTATGTGCCTGTAGCTGAGTTAAGAGAAAAGGTCAAATAG 2154 0.4085 MRDTEKSNNRGSTKAGNSKEHIKLKVDSPRFKRSSSKSQEKKRKLKSKSHKLRDSANASEKTAIDSSVKGPNKNTSNKRLIIRQKLHKTDRNSKQVQPTVKIQGGKNSPNNDRENEKDVDQETNIQKRKRRRRKKKRERLNVEIDDTSRLQRRTRNLLIRMKLEQNLIDAYSGEGWKGHSREKIRPEMELQRAKKQIIKCKLGIRDAIRQLDSLSSVGSIEGSAIATDGSVYHEHIFCANCKMREAFPDNDIILCDGTCNRAFHQRCLDPPLDTENIPPGDQGWFCKFCECKIEILEATNAHLGTRFSLDSTWQDIFKEEAAIPDGDTGLLNQEEEWPSDDPEDDDYNPEMKEDSHGGNNTDGNDDNASDDSSSSGSMWSLNGECSLLDEGLEYYSVSHGRIDSDESGEIACGRRQRTAVDYRKLYDEMFGKDAHYEQMSEDEDWGPGKKPRTEKESDAVNTLMTLHEIENKHQNDENNVRIRGNSSGIKRPCFRIPHDAVEKLRQVFAENELPPKSVKDALSKELGLDAAKVNKWFKNARYSALKTRKYREGGKQLQSFTSKSSKDCTSQQVQEDEILKPKVKKITVIRSVKKCENVTGKEKTKASSSLLKKKKPEVPPPSRENGNEDSTEDNGDVSLMKLLKERKKKVTFAFERGSKEAELELERLTKLKMKVDRLKQSLTQVQNYRSKGSEKEPNLNEPSIVYVPVAELREKVK 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02365 717 MobiDBLite consensus disorder prediction 554 574 - -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 1 138 - -
Vivi4g02365 717 ProSitePatterns Zinc finger PHD-type signature. 238 289 IPR019786 -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 59 79 - -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 361 378 - -
Vivi4g02365 717 ProSiteProfiles Zinc finger PHD-type profile. 235 292 IPR019787 -
Vivi4g02365 717 FunFam pathogenesis-related homeodomain protein-like 229 289 - -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 334 348 - -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 16 35 - -
Vivi4g02365 717 SUPERFAMILY Homeodomain-like 484 549 IPR009057 -
Vivi4g02365 717 SMART HOX_1 489 551 IPR001356 GO:0003677
Vivi4g02365 717 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 229 286 IPR013083 -
Vivi4g02365 717 SMART PHD_3 237 290 IPR001965 -
Vivi4g02365 717 CDD homeodomain 490 548 IPR001356 GO:0003677
Vivi4g02365 717 CDD PHD_PRHA_like 237 289 IPR045876 -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 110 126 - -
Vivi4g02365 717 Coils Coil 661 681 - -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 598 638 - -
Vivi4g02365 717 FunFam pathogenesis-related homeodomain protein 489 553 - -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 323 378 - -
Vivi4g02365 717 PANTHER POLYCOMB-LIKE TRANSCRIPTION FACTOR 23 716 - -
Vivi4g02365 717 Pfam Homeodomain 498 542 IPR001356 GO:0003677
Vivi4g02365 717 Gene3D - 489 553 - -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 95 109 - -
Vivi4g02365 717 Pfam PHD-finger 237 292 IPR019787 -
Vivi4g02365 717 SUPERFAMILY FYVE/PHD zinc finger 228 294 IPR011011 -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 553 574 - -
Vivi4g02365 717 MobiDBLite consensus disorder prediction 36 50 - -
Vivi4g02365 717 ProSiteProfiles 'Homeobox' domain profile. 487 547 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02365 Vivi-Chr4 116959734 116964219 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02365 142 549 Homeobox Transcription Factor Family AT4G29940 58.768 6.17e-156 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-PHD Vivi4g02365 Homeodomain 1.6e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02365 - - gmx:100787118 886.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02365 4 116959734 116964219 Vivi4g02365 4 116959734 116964219 ECH
Vivi4g02365 4 116959734 116964219 Vivi4g02365 4 116959734 116964219 PCT