Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02354 ATGGAGAATATTGATCAAGAGTACAAACGTTTCTTGGAGAACAACATGTTTGTCCAAAACCAAGAGATTGATAGCTGGGGATTGGATGAGGCACTTTCAGGATACTATGACTCAAGCTCTCCTGATGGTGCAGCTTCATCTAAGAACATTGTTTCTGAAAGGAATAGAAGAAATAAACTCAATAAAAAACTCTTGGAACTTAGAGCAGTGGTCCCTAATATTAGCAAGATGGATAAGGCTTCAATAATTAAGGATGCAATTGAGTACATACAGCACTTGCATGAACAAGAAAAGATTCTTGAAGCTGAGATAATGGAACTTGAATCTGGGATGCCAAATAATATTAATCCAAGTTATGATTTAGATCAGGAGCTTCCTGTGTTGCTAAGGTCCAAGAAGAAGAGAACAGATCAATTCTATGATTCTGTCAATTCAACAAACTCTCCAATAGAAATCCTTGAGCTTAGGGTTAAATACATGGAAGAAAATACAATACTAGTGAGCTTGACATGTACCCAAAGGACAGACACTATGGTTCAATTATATGAAGTGTTCGAATCTTTGAACCTCAAAATTATCACTGCCAACATCACTTGTTCTTCTGGCAAACTTATGAAGACAGTCTTAATCCAGGCAAATGAAGAAGACAAAGATCTATTGCAGATGAAGATCCAAACAGCTATTGCAGCTCGCAATGATCCTCTAAGTCCCATGAGTATCTAA 723 0.3707 MENIDQEYKRFLENNMFVQNQEIDSWGLDEALSGYYDSSSPDGAASSKNIVSERNRRNKLNKKLLELRAVVPNISKMDKASIIKDAIEYIQHLHEQEKILEAEIMELESGMPNNINPSYDLDQELPVLLRSKKKRTDQFYDSVNSTNSPIEILELRVKYMEENTILVSLTCTQRTDTMVQLYEVFESLNLKIITANITCSSGKLMKTVLIQANEEDKDLLQMKIQTAIAARNDPLSPMSI 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02354 240 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 42 110 - -
Vivi4g02354 240 Gene3D - 42 110 IPR036638 GO:0046983
Vivi4g02354 240 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 42 110 IPR036638 GO:0046983
Vivi4g02354 240 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 44 225 - -
Vivi4g02354 240 Coils Coil 1 21 - -
Vivi4g02354 240 Coils Coil 90 110 - -
Vivi4g02354 240 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 44 93 IPR011598 GO:0046983
Vivi4g02354 240 SMART finulus 50 99 IPR011598 GO:0046983
Vivi4g02354 240 Pfam Helix-loop-helix DNA-binding domain 51 94 IPR011598 GO:0046983
Vivi4g02354 240 Coils Coil 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02354 Vivi-Chr4 116522781 116531420 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02354 1 211 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G57150 59.447 5.99e-76 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi4g02354 HLH 1.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02354 - - gmx:100817978 345.895