Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02332 ATGAGTTTTCTGAACGGTGCTTCACCGCGCCGGAGTCCGGCGGAGAATGTTGATATTGAAGCTGGTCCGTTTCCTCACCGCTCTTCGGATGACGACGGGGATACTTCCGATCCGTTTGATATTGGTGGGACAAAGCATGCTTCTATTAATCGACTGAAACGATGGAGACAAGCGGCGCTTGTGCTAAATGCTTCCCGTCGATTTCGTTATACCTTGGACTTGAAGAAAGAAGAAGAGAAGAAACAAATACTGAGAAAGATTAGAGCGCATGCTCAAGCCATTAGAGCAGCATATCTTTTCAAAGCAGCTGGGGGGCCTGTGCAGGAACCAGGACCAGGGCAAGGGCAAGTGAGGGAAACTGCAAAACCCCTTCAAACCCCTACTGGTGAATTTGCAATTGGACCCGAGCAACTCGCCTCCATTTCAAGGGAGCACGATATTGCCTCTTTGCAGCAATATGGAGGGGTTGCAGGGGTATCAAATTTATTGAAAACCGATTTAGAGAAGGGGGTTGATGGCGATGATGCTGACTTACTAAGACGAAGAAATGCATTTGGTTCCAACAATTACCCTCGAAAGAAAGGAAGAAGTTTTCTGATGTTTATGTGGGATGCTTGCAAGGATCTGACCTTGGTTATTTTAATGGTAGCTGCAGCAGCTTCATTGGCACTGGGGATAAAATCCGAGGGTATTAAGGAAGGATGGTATGATGGGGGAAGCATTGCTTTTGCAGTTATTCTTGTTATTGTTGTTACAGCTGTAAGTGATTATAAGCAGTCTCTTCAGTTTCGAGACCTAAATGAAGAGAAGAGAAATATACACTTGGAGGTTGTTAGAGGTGGTAGAAGGGTTGAAATCTCAATATATGATCTCGTTGTTGGGGATGTTATTCCTCTTAATATTGGTAACCAGGTCCCTGCTGATGGAATTGTGATCAGTGGTCACTCTCTTTCCATTGATGAATCGAGCATGACAGGGGAGAGCAAAATTGCCCACAAGGATTCTAAGGATCCCTTTCTGATGTCTGGCTGTAAGGTTGCAGATGGCAGTGGTACTATGCTGGTAACGGGTGTTGGAATTAATACTGAATGGGGCCTTCTAATGGCTAGCATTTCAGAAGATACTGGTGAAGAAACACCTCTGCAGGTCCGCTTGAATGGCGTAGCCACCTTTATTGGTATTGTTGGACTCACTGTTGCTGTTATTGTCCTGGTTGTGCTACTGGCCAGATATTTCTCCGGGCATTCGAAGAATAGTGATGGGACAAAACAGTTCACAGCTGGCAGGACCTCAGCTAGTGATGCTGTTGATGGAGCAATTAAGATAATAACTGTTGCGGTCACCATTGTAGTTGTTGCAGTGCCTGAGGGGCTCCCACTTGCAGTCACTTTAACTCTGGCCTACTCAATGCGGAAAATGATGGCAGATAAAGCTTTGGTGAGGAGGCTTTCTGCCTGTGAAACAATGGGCTCTGCTACAACCATATGCAGCGATAAAACCGGCACATTGACTATGAATCAGATGACTGTAGTTGAGGTTTATGCTGGGGGCAGTAAGATTGATCCACCTCACCAGCTGGAGAGTTCTCCTAAGCTACGCGCTCTACTCATTGAAGGTGTTGCACAGAACACTAATGGCAGCGTTTTTGTCCCTGAGGGTGCTAATGATGTTGAGGTTTCTGGATCGCCAACAGAAAAAGCAATTTTACATTGGGCACTAAAGGTTGGGATGAATTTCGTGAATGCTCGGTCAGAATCATCAATTCTTCATGTCTTTCCGTTCAACTCAGAGAAAAAGAGAGGCGGAGTTGCAATACAGACGGCTGACTCTGTTCATATACATTGGAAAGGTGCCGCTGAGATTGTTCTAGCCTGCTGTACAGGGTACATTGATAGAAATGACCAGCTGGTGAAAATAGATGAAGAGAAGATGAATTATTTCAGAAAAGCTATTGAAGACATGGCTTCTGATAGTCTACGTTGTGTTGCAATTGCATATAGACCATTTGAGGATGCAGTTCCAGATACTGAGGAACAACTTGCTCACTGGTCTTTGCCAGAGGATGGACTGGTTTTACTAGCTATTGTTGGTATCAAGGATCCTTGTCGACCTGGTGTCAAAGATTCAGTACAGCTTTGCCAAAAAGCCGGGGTTAAGGTAAGGATGGTCACGGGTGACAATGTCAAAACTGCAAAAGCAATTGCTGTGGAATGTGGAATACTTAGCTCACTTGCTGAAGCTACAGAGAGAAATGTCATTGAAGGAAAAACATTTCGAGCCTTGTCAGATTCAGAGAGAGAAGATATTGCAGATTCGATATCGGTTATGGGAAGGTCATCTCCCAATGATAAACTATTGTTAGTACAAGCATTAAGAAGGAAGGGCCATGTTGTTGCTGTAACCGGGGATGGAACGAATGATGCTCCTGCACTTCATGAGGCGGATATTGGTCTTGCTATGGGTATTGCTGGCACAGAAGTTGCCAAAGAGAGCTCTGATATCATTATATTGGATGACAATTTTGCTTCAGTTGTGAAGGTTGTCAGATGGGGTCGGTCTGTTTATGCAAATATTCAAAAATTTATCCAGTTTCAGCTGACAGTCAATGTGGCAGCTCTTGTTATAAATGTTGTTGCCGCTGTTTCCTCCGGTGAGGTTCCACTGAATGCAGTGCAGCTTCTCTGGGTAAATCTTATCATGGATACACTGGGAGCACTAGCCTTGGCAACTGAACCACCAACTGATCACCTCATGGATCGAACTCCTGTGGGTCGTAGGGAACCTCTCATAACAAATATCATGTGGAGGAATTTGCTGATACAGGCGATGTATCAAGTGTGTGTTTTGCTTGTTCTCAATTTCCAAGGTGTACGCATATTGGGTCTTGAGCATCAAAATAGTGAACATGCTATCAAAGTAAAGAACACTTTGATCTTCAATGCTTTTGTCATCTGTCAAGTCTTCAACGAATTTAATGCTCGTAAGCCAGATGAATTCAACATTTTTAAAGGAGTCACTAAAAACTTCCTCTTTATGGGAATAATTGCATTTACTGTTGTACTTCAGGTTATCATTGTTGAATTTCTTGGGAAGTTCACTAAAACTACTCGGCTTAATTGGCAGCAGTGGCTCATTTCTGTCGTTATTGGATTAATTGGTTGGCCTCTTGCCGTTGTTGGGAAATTGATACCAGTACCAGCAACTCCAATCAACACTGTTTTTGCTAAGATTCGAAGAACTAAAAAGAGTAAAGAACCTGTGACATCTCAATAG 3273 0.4372 MSFLNGASPRRSPAENVDIEAGPFPHRSSDDDGDTSDPFDIGGTKHASINRLKRWRQAALVLNASRRFRYTLDLKKEEEKKQILRKIRAHAQAIRAAYLFKAAGGPVQEPGPGQGQVRETAKPLQTPTGEFAIGPEQLASISREHDIASLQQYGGVAGVSNLLKTDLEKGVDGDDADLLRRRNAFGSNNYPRKKGRSFLMFMWDACKDLTLVILMVAAAASLALGIKSEGIKEGWYDGGSIAFAVILVIVVTAVSDYKQSLQFRDLNEEKRNIHLEVVRGGRRVEISIYDLVVGDVIPLNIGNQVPADGIVISGHSLSIDESSMTGESKIAHKDSKDPFLMSGCKVADGSGTMLVTGVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLTVAVIVLVVLLARYFSGHSKNSDGTKQFTAGRTSASDAVDGAIKIITVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTMNQMTVVEVYAGGSKIDPPHQLESSPKLRALLIEGVAQNTNGSVFVPEGANDVEVSGSPTEKAILHWALKVGMNFVNARSESSILHVFPFNSEKKRGGVAIQTADSVHIHWKGAAEIVLACCTGYIDRNDQLVKIDEEKMNYFRKAIEDMASDSLRCVAIAYRPFEDAVPDTEEQLAHWSLPEDGLVLLAIVGIKDPCRPGVKDSVQLCQKAGVKVRMVTGDNVKTAKAIAVECGILSSLAEATERNVIEGKTFRALSDSEREDIADSISVMGRSSPNDKLLLVQALRRKGHVVAVTGDGTNDAPALHEADIGLAMGIAGTEVAKESSDIIILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGEVPLNAVQLLWVNLIMDTLGALALATEPPTDHLMDRTPVGRREPLITNIMWRNLLIQAMYQVCVLLVLNFQGVRILGLEHQNSEHAIKVKNTLIFNAFVICQVFNEFNARKPDEFNIFKGVTKNFLFMGIIAFTVVLQVIIVEFLGKFTKTTRLNWQQWLISVVIGLIGWPLAVVGKLIPVPATPINTVFAKIRRTKKSKEPVTSQ 1090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02332 1090 CDD P-type_ATPase_Ca_PMCA-like 178 934 - -
Vivi4g02332 1090 NCBIfam calcium-translocating P-type ATPase, PMCA-type 144 1065 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Vivi4g02332 1090 FunFam Calcium-transporting ATPase 9 plasma membrane-type 350 520 - -
Vivi4g02332 1090 Pfam Ca2+-ATPase N terminal autoinhibitory domain 37 79 IPR024750 GO:0005516
Vivi4g02332 1090 SUPERFAMILY Calcium ATPase, transmembrane domain M 153 1065 IPR023298 -
Vivi4g02332 1090 FunFam Calcium-transporting ATPase 818 1067 - -
Vivi4g02332 1090 FunFam Calcium-transporting ATPase 252 372 - -
Vivi4g02332 1090 PRINTS P-type cation-transporting ATPase superfamily signature 320 334 - -
Vivi4g02332 1090 PRINTS P-type cation-transporting ATPase superfamily signature 801 820 - -
Vivi4g02332 1090 PRINTS P-type cation-transporting ATPase superfamily signature 825 837 - -
Vivi4g02332 1090 PRINTS P-type cation-transporting ATPase superfamily signature 496 510 - -
Vivi4g02332 1090 PRINTS P-type cation-transporting ATPase superfamily signature 694 705 - -
Vivi4g02332 1090 PRINTS P-type cation-transporting ATPase superfamily signature 716 726 - -
Vivi4g02332 1090 SMART Cation_ATPase_N_a_2 152 226 IPR004014 -
Vivi4g02332 1090 SFLD C1.7: P-type atpase like 478 853 - -
Vivi4g02332 1090 NCBIfam HAD-IC family P-type ATPase 768 881 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02332 1090 NCBIfam HAD-IC family P-type ATPase 436 519 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02332 1090 MobiDBLite consensus disorder prediction 1 42 - -
Vivi4g02332 1090 Gene3D - 506 701 IPR023299 GO:0000166
Vivi4g02332 1090 SUPERFAMILY HAD-like 494 906 IPR036412 -
Vivi4g02332 1090 SFLD p-type atpase 478 853 IPR044492 -
Vivi4g02332 1090 PRINTS H+-transporting ATPase (proton pump) signature 833 858 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02332 1090 PRINTS H+-transporting ATPase (proton pump) signature 801 817 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02332 1090 PRINTS H+-transporting ATPase (proton pump) signature 647 665 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vivi4g02332 1090 Gene3D - 493 846 IPR023214 -
Vivi4g02332 1090 SUPERFAMILY Calcium ATPase, transduction domain A 274 369 IPR008250 -
Vivi4g02332 1090 Gene3D - 177 372 - -
Vivi4g02332 1090 Pfam Cation transporting ATPase, C-terminus 886 1062 IPR006068 -
Vivi4g02332 1090 Pfam Cation transporter/ATPase, N-terminus 154 221 IPR004014 -
Vivi4g02332 1090 FunFam Calcium-transporting ATPase 506 701 - -
Vivi4g02332 1090 FunFam Calcium-transporting ATPase 204 261 - -
Vivi4g02332 1090 Gene3D - 47 102 - -
Vivi4g02332 1090 FunFam Calcium-transporting ATPase 47 103 - -
Vivi4g02332 1090 Pfam E1-E2 ATPase 274 474 - -
Vivi4g02332 1090 Gene3D - 204 1052 - -
Vivi4g02332 1090 ProSitePatterns E1-E2 ATPases phosphorylation site. 498 504 IPR018303 -
Vivi4g02332 1090 PANTHER CATION TRANSPORTING ATPASE 119 1065 - -
Vivi4g02332 1090 Pfam haloacid dehalogenase-like hydrolase 493 815 - -
Vivi4g02332 1090 FunFam Calcium-transporting ATPase 694 846 - -
Vivi4g02332 1090 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 503 698 IPR023299 GO:0000166
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02332 Vivi-Chr4 115634135 115650911 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02332 1 1084 Primary Pumps ATPases AT5G57110 72.468 0.0 1571
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02332 K01537 - gmx:100792945 1769.98