Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02313 ATGAATGATGATGGTAATCACAAAACATCCACGTTGGATCTTAATCTTCAACTTGGATTAGGATTCCATGTGGAAAAAAATGTGAACAAATCATTGGTTAATTCAAAAAATGATTTGGCCTTTGAGTTGAGTTTGAAGAGAGGCTATGTTGAAGAACAAGTTGAAGAAGAAGATGAAGAAATTGCTATTAACACCTCCAATGACAGGAACGGGTGCAGTAAGAAATTGAGGCTTACAAAGGAGCAATCTACCATGCTTGAAGATGCTTTCAAGCTTCATAACACCATCAACACTGCTCAGAAACGGGCACTTGCTGAGAAATTGAATTTAAAGCAAAGACAAGTTGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACTAAGCTAAAACAAACAGAAGTAAACTGCATATTCCTAAAGAAATGTCATGACAAACTAAGTGAAGAAAATCAAAAGCTGAAGAAGGAATTAGAAGAGTTACGTGCATTAAAAGTTGTTGCACCAAACACAACTCAATCATCCTCTAAAGCTGCAGATTGGAACATTTGTTCATCATGCAAGAAAATATGGAAGCCCAATGAAGAAGAAGATGTGGTTAGAAAGAGCAGCCATAGCACCATAGAGTTAGATTAG 630 0.3667 MNDDGNHKTSTLDLNLQLGLGFHVEKNVNKSLVNSKNDLAFELSLKRGYVEEQVEEEDEEIAINTSNDRNGCSKKLRLTKEQSTMLEDAFKLHNTINTAQKRALAEKLNLKQRQVEVWFQNRRARTKLKQTEVNCIFLKKCHDKLSEENQKLKKELEELRALKVVAPNTTQSSSKAADWNICSSCKKIWKPNEEEDVVRKSSHSTIELD 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02313 209 Pfam Homeobox associated leucine zipper 129 162 IPR003106 GO:0006355|GO:0043565
Vivi4g02313 209 CDD homeodomain 74 130 IPR001356 GO:0003677
Vivi4g02313 209 Pfam Homeodomain 74 127 IPR001356 GO:0003677
Vivi4g02313 209 SUPERFAMILY Homeodomain-like 64 130 IPR009057 -
Vivi4g02313 209 SMART halz 129 172 IPR003106 GO:0006355|GO:0043565
Vivi4g02313 209 ProSitePatterns 'Homeobox' domain signature. 104 127 IPR017970 GO:0000981|GO:0006355
Vivi4g02313 209 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 30 194 - -
Vivi4g02313 209 Coils Coil 138 165 - -
Vivi4g02313 209 Gene3D - 78 126 - -
Vivi4g02313 209 ProSiteProfiles 'Homeobox' domain profile. 69 129 IPR001356 GO:0003677
Vivi4g02313 209 SMART HOX_1 71 133 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02313 Vivi-Chr4 114773081 114775143 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02313 38 192 Homeobox Transcription Factor Family AT4G17460 50.323 4.14e-43 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi4g02313 Homeodomain 9.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02313 K09338 - gmx:100778922 154.451
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00681 1 14726140 14727349 Vivi4g02313 4 114773081 114775143 PCT