Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02301 ATGACACCAACTTATCGTTATTCACTACCTTCTCCTCCCATGCCTTTTGATCTTAGTAACAATGAAGATCACAACCACCATCTCTTCAATCCAAACATTCATCAACCCTCTTCTTCATCTTCTTCCCTATCATATTCCACACTTTTTAACCAAAACCAAGTTCAAGGACGATCTTATTCTTCTGAACCGAATCACATACAAAGTGATCTACAGGTTGTGAAGTTTGTTCCTTCTAGTGGATCATGTGATCATCAAGAACTAAAGAAAGAAAATAGAAATGAAGCGTTTGAACCCGAGGATAATAGTTCAATGAAGTGGATGCCATCAAAGAAGAGAATAATTAAGAGAATGATGGAAGATCAAAGGGTTTCTGATGAGAAATTTGAAAAAGATAAACTATTATTACATGTAGAAACCGATAATAGTAGCAACAACAATGGCTCAAACAACACTAATATGATTGTTAGGGTTTGTAGTGATTGCCACACAACTAAGACCCCTCTCTGGAGAAGTGGACCAGCAGGTCCTAAGTCTCTCTGCAATGCCTGCGGGATTCGACAAAGGAAAGCGCGGCGCGCCCTCGCAGCAGCTGCATCTGCAAATGTTGAGAATCATGTGGCTGCTGAGAAGCCCTATGTGAAAGGAAAGAAGTTGCAAATCAAAAGGAAAAGATCCAAAACTGATGAATGTGCACCACCACAGATGAAAAGGAAGGGTAAAATTGGAAAAGGTTCAACTAGTTTTGAAGATTTGATAACAAGTTTGAGTAACAACTTTGCTTCTCATCAAGTTTTCCCTCAAGATGAGAAAGAGGCTGCTATTCTACTCATGGCTTTGTCTTATGGATTACTTCATGAGTTTGATTCATTGTAA 873 0.3895 MTPTYRYSLPSPPMPFDLSNNEDHNHHLFNPNIHQPSSSSSSLSYSTLFNQNQVQGRSYSSEPNHIQSDLQVVKFVPSSGSCDHQELKKENRNEAFEPEDNSSMKWMPSKKRIIKRMMEDQRVSDEKFEKDKLLLHVETDNSSNNNGSNNTNMIVRVCSDCHTTKTPLWRSGPAGPKSLCNACGIRQRKARRALAAAASANVENHVAAEKPYVKGKKLQIKRKRSKTDECAPPQMKRKGKIGKGSTSFEDLITSLSNNFASHQVFPQDEKEAAILLMALSYGLLHEFDSL 290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02301 290 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 286 - -
Vivi4g02301 290 SMART GATA_3 152 204 IPR000679 GO:0006355|GO:0043565
Vivi4g02301 290 MobiDBLite consensus disorder prediction 223 245 - -
Vivi4g02301 290 Gene3D - 154 241 IPR013088 GO:0006355|GO:0008270
Vivi4g02301 290 MobiDBLite consensus disorder prediction 81 104 - -
Vivi4g02301 290 FunFam GATA transcription factor 21 152 230 - -
Vivi4g02301 290 MobiDBLite consensus disorder prediction 1 44 - -
Vivi4g02301 290 MobiDBLite consensus disorder prediction 30 44 - -
Vivi4g02301 290 ProSitePatterns GATA-type zinc finger domain. 158 183 IPR000679 GO:0006355|GO:0043565
Vivi4g02301 290 MobiDBLite consensus disorder prediction 83 99 - -
Vivi4g02301 290 CDD ZnF_GATA 157 185 IPR000679 GO:0006355|GO:0043565
Vivi4g02301 290 ProSiteProfiles GATA-type zinc finger domain profile. 156 188 IPR000679 GO:0006355|GO:0043565
Vivi4g02301 290 Pfam GATA zinc finger 158 191 IPR000679 GO:0006355|GO:0043565
Vivi4g02301 290 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 192 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02301 Vivi-Chr4 113983846 113985450 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02301 103 285 C2C2-Gata Transcription Factor Family AT4G26150 41.038 1.90e-32 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Vivi4g02301 GATA 3.6e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02301 - - psat:127136613 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi1g00692 1 14869398 14871124 Vivi4g02301 4 113983846 113985450 PCT