Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02238 ATGCTTTCCTGCAGGTATATATATCTTGGGTTATTCGACAGCGAAGTAGAAGCTGCAAGGGCTTATGACAAAGCAGCTATCCAAAGCAATGGAATGGAAGCAGTGACTAATTTTGAGCCCAGCACATACGAAGGAGAGATGAAATCTGCAGCCATAAATGATGGCAGCAGTCCAAATCTTGATCTCAATTTGGGCATAGCCAAACCAGCACCGGGTCCCAAAGAAAATTGGGGGAAACTTCACTTCCCCTCTGTCTCTTACACAAGTTCAAGGATGGAAACGAATGTTTCAGGAATCAGTAATTCATCTTTAAAAAGGCTATTAGTAACTGAAGAGCATCGTTCTTTTCGGAATGACATGTATCCCGGTTTCTTTCCCAATGAGGTACATATTAGAAAGGATAACTCAGCAGTCTCTTCTCATAGATATTGGAGTCAATCAACACAAGAGCCAGTCTCCTTGTTGGACCAAAGAGATTAA 480 0.4188 MLSCRYIYLGLFDSEVEAARAYDKAAIQSNGMEAVTNFEPSTYEGEMKSAAINDGSSPNLDLNLGIAKPAPGPKENWGKLHFPSVSYTSSRMETNVSGISNSSLKRLLVTEEHRSFRNDMYPGFFPNEVHIRKDNSAVSSHRYWSQSTQEPVSLLDQRD 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02238 159 MobiDBLite consensus disorder prediction 140 159 - -
Vivi4g02238 159 CDD AP2 5 41 IPR001471 GO:0003700|GO:0006355
Vivi4g02238 159 SMART rav1_2 2 45 IPR001471 GO:0003700|GO:0006355
Vivi4g02238 159 Gene3D AP2/ERF domain 3 40 IPR036955 GO:0003700|GO:0006355
Vivi4g02238 159 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 70 - -
Vivi4g02238 159 ProSiteProfiles AP2/ERF domain profile. 1 39 IPR001471 GO:0003700|GO:0006355
Vivi4g02238 159 SUPERFAMILY DNA-binding domain 4 40 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02238 Vivi-Chr4 110800995 110804895 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02238 1 65 AP2-EREBP Transcription Factor Family AT4G36920 57.353 1.59e-19 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02238 K09284 - vvo:131595056 324.324