Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02203 ATGGAAGGTTTATTTTCCCTTCCTGTAGCCGTCAGAACTGAATTTATCCATTCTTTGATGCATTCTCTTGGAGGATGTTCTTACATTTGTGTTTGGACATATGATACAATTTTACCAAATCGTTTGTCCTTCTTGGATGGTATCTACAATGTGATAAGCAGCCACCAACCAAGTTCTTCGTTGGGAAGCCTCGCGCAACAGCTTTTCGATCAGTACACGATTTTATCATTCGATATCAATGATGACCGAATTCCTGGACTAGCTTTTAGGAACCAACGTCCTTATATAGAGCTGCAGCAGCTGGAGCTTCTTACACTGTCATCAACTGAAATACAGACACAATTTTACAAGGAAGCAAGAATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAACATGTCCCAAACTGATATTCAAACAGCACTTAGGAATTTATTTCCTGAGGATTTTTCAAGACAAATACAACAAATTGATCAGAATAATAATAATAATAATAATAATAATCCGCCTTCATCATCTTCATCTTCGATGAGATCATTATCAACAGCCGGTAGTCCAGAATATTCATCTCTCATGTTCATAAATCCACCTGGAACTTCTCCATCATCACATAACTTTCCTGATCATATCCTTGGAGGAGTAAACATTCCTCCAATGAGACCTGTTTCAAACACACTACCCTTTCAGCTTCAACAACAACCTCAAATCACACCAACACAATTGTTCCCTATTGATCAACAGAATGATGCAATAATGAGAGCAATCCAAAATGTTCTATCTACACCCCCTTCTCAGCAAAATCACGCGGCACGTCCAGAAGCTAGTGCATTTGAAAGGTATAGAAACGATAAAAGTCCTATTATTTTAGGCTCGAATTTTCGAAGACAGAGTTTGATGAAGAGATCGTTCGCGTTCTTTAGAAACTTGAATTTGATGAGACTGAAAGAACGAAACCAAGCGATGCGTCCTTCGAGTAACCAACTTCATCATATGATATCGGAGCGACGAAGGCGCGAGAAGCTTAACGATAACTTCCAAGCACTTAGGGCATTACTTCCTCAAGGAACTAAGAAAGACAAAGCATCCATACTGATAACAGCGAAGGAGACACTAAGGTCGTTGATGGAAGAGATAGAGAAACTAAGCAAGAGAAACCAAGAGTTGTTGATGTCACAAAAGTCGGCTGCTTCGAATAAGGAAACCATGAAATTCTCATCGAATGAGAGAATTAACGTGCGAGTTTCGCATGTAGCAGAATCAAGTTCATCGGAAGATGAACCAATGACAGTGGAGTTACAAGTGAATGTGCTAGGACACGTTTCTCAAGCTGATATGTTGATTAGGTTATTAGAATTCTTAAATCAAGTTCATCATGTCAATTTGATTTCAATGGATGCAACAAATACAAATACAAATACTTCACAAGAGAATAATTATCTTCATCAAATAACATTCAGATTAAGGATTACTCAGGTGAGTGAATGGGACGAGGAGGCCTTCCAAGAAGCAGTGAGAAGAGTAGTTGCTGACTTGATACAGTATCAAGTGGACCAAAATCTATGA 1587 0.3869 MEGLFSLPVAVRTEFIHSLMHSLGGCSYICVWTYDTILPNRLSFLDGIYNVISSHQPSSSLGSLAQQLFDQYTILSFDINDDRIPGLAFRNQRPYIELQQLELLTLSSTEIQTQFYKEARIKTAVFMGCNKGEIELGFLNMSQTDIQTALRNLFPEDFSRQIQQIDQNNNNNNNNNPPSSSSSSMRSLSTAGSPEYSSLMFINPPGTSPSSHNFPDHILGGVNIPPMRPVSNTLPFQLQQQPQITPTQLFPIDQQNDAIMRAIQNVLSTPPSQQNHAARPEASAFERYRNDKSPIILGSNFRRQSLMKRSFAFFRNLNLMRLKERNQAMRPSSNQLHHMISERRRREKLNDNFQALRALLPQGTKKDKASILITAKETLRSLMEEIEKLSKRNQELLMSQKSAASNKETMKFSSNERINVRVSHVAESSSSEDEPMTVELQVNVLGHVSQADMLIRLLEFLNQVHHVNLISMDATNTNTNTSQENNYLHQITFRLRITQVSEWDEEAFQEAVRRVVADLIQYQVDQNL 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02203 528 Coils Coil 372 399 - -
Vivi4g02203 528 CDD bHLH_AtbHLH_like 338 390 IPR045239 -
Vivi4g02203 528 Gene3D - 321 408 IPR036638 GO:0046983
Vivi4g02203 528 SMART finulus 339 388 IPR011598 GO:0046983
Vivi4g02203 528 Pfam Helix-loop-helix DNA-binding domain 337 382 IPR011598 GO:0046983
Vivi4g02203 528 MobiDBLite consensus disorder prediction 166 210 - -
Vivi4g02203 528 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 333 382 IPR011598 GO:0046983
Vivi4g02203 528 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 331 400 IPR036638 GO:0046983
Vivi4g02203 528 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 108 518 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02203 Vivi-Chr4 108944172 108948126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02203 12 519 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 39.074 1.28e-88 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi4g02203 HLH 4.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02203 - - vvo:131631482 920.228