Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02202 ATGGAAGGTTTATTTTCCCTTCCTGTAGCCGTCAGAACTGAATTTATCCATTCTTTGATGCATTCTCTTGGAGGATGTTCTTACATTTGTGTTTGGACATATGATACAATTTTACCAAAGTATATATACATATTTAATATATCTATATGCATACACCTACCTACATTATTATTATTATATATAAGGTTGCTGATTCTACTTATACAACGGTTTGATTTTATTTTTTTATTTCTTTGGACTAGTCGTTTGTCCTTCTTGGATGGTATCTACAATGTGATAAGCAGCCACCAACCAAGTTCTTCGTTGGGAAGCCTCGCGCAACAGCTTTTCGATCAGTACACGATTTTATCATTCGATATCAATGATGACCGAATTCCTGGACTAGCTTTTAGGAACCAACGTCCTTATATAGAGCTGCAGCAGCTGGAGCTTCTTACACTGTCATCAACTGAAATACAGACACAATTTTACAAGGAAGCAAGAATTAAGACTGCTGTTTTCATGGGGTGCAACAAAGGAGAAATTGAGCTTGGTTTCTTAAACATGTCCCAAACTGATATTCAAACAGCACTTAGGAATTTATTTCCTGAGGATTTTTCAAGACAAATACAACAAATTGATCAGAATAATAATAATAATAATAATAATAATCCGCCTTCATCATCTTCATCTTCGATGAGATCATTATCAACAGCCGGTAGTCCAGAATATTCATCTCTCATGTTCATAAATCCACCTGGAACTTCTCCATCATCACATAACTTTCCTGATCATATCCTTGGAGGAGTAAACATTCCTCCAATGAGACCTGTTTCAAACACACTACCCTTTCAGCTTCAACAACAACCTCAAATCACACCAACACAATTGTTCCCTATTGATCAACAGAATGATGCAATAATGAGAGCAATCCAAAATGTTCTATCTACACCCCCTTCTCAGCAAAATCACGCGGCACGTCCAGAAGCTAGTGCATTTGAAAGGTATAGAAACGATAAAAGTCCTATTATTTTAGGCTCGAATTTTCGAAGACAGAGTTTGATGAAGAGATCGTTCGCGTTCTTTAGAAACTTGAATTTGATGAGACTGAAAGAACGAAACCAAGCGATGCGTCCTTCGAGTAACCAACTTCATCATATGATATCGGAGCGACGAAGGCGCGAGAAGCTTAACGATAACTTCCAAGCACTTAGGGCATTACTTCCTCAAGGAACTAAGAAAGACAAAGCATCCATACTGATAACAGCGAAGGAGACACTAAGGTCGTTGATGGAAGAGATAGAGAAACTAAGCAAGAGAAACCAAGAGTTGTTGATGTCACAAAAGTCGGCTGCTTCGAATAAGGAAACCATGAAATTCTCATCGAATGAGAGAATTAACGTGCGAGTTTCGCATGTAGCAGAATCAAGTTCATCGGAAGATGAACCAATGACAGTGGAGTTACAAGTGAATGTGCTAGGACACGTTTCTCAAGCTGATATGTTGATTAGGTTATTAGAATTCTTAAATCAAGTTCATCATGTCAATTTGATTTCAATGGATGCAACAAATACAAATACAAATACTTCACAAGAGAATAATTATCTTCATCAAATAACATTCAGATTAAGGATTACTCAGGTGAGTGAATGGGACGAGGAGGCCTTCCAAGAAGCAGTGAGAAGAGTAGTTGCTGACTTGATACAGTATCAAGTGGACCAAAATCTATGA 1710 0.3754 MEGLFSLPVAVRTEFIHSLMHSLGGCSYICVWTYDTILPKYIYIFNISICIHLPTLLLLYIRLLILLIQRFDFIFLFLWTSRLSFLDGIYNVISSHQPSSSLGSLAQQLFDQYTILSFDINDDRIPGLAFRNQRPYIELQQLELLTLSSTEIQTQFYKEARIKTAVFMGCNKGEIELGFLNMSQTDIQTALRNLFPEDFSRQIQQIDQNNNNNNNNNPPSSSSSSMRSLSTAGSPEYSSLMFINPPGTSPSSHNFPDHILGGVNIPPMRPVSNTLPFQLQQQPQITPTQLFPIDQQNDAIMRAIQNVLSTPPSQQNHAARPEASAFERYRNDKSPIILGSNFRRQSLMKRSFAFFRNLNLMRLKERNQAMRPSSNQLHHMISERRRREKLNDNFQALRALLPQGTKKDKASILITAKETLRSLMEEIEKLSKRNQELLMSQKSAASNKETMKFSSNERINVRVSHVAESSSSEDEPMTVELQVNVLGHVSQADMLIRLLEFLNQVHHVNLISMDATNTNTNTSQENNYLHQITFRLRITQVSEWDEEAFQEAVRRVVADLIQYQVDQNL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02202 569 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 374 423 IPR011598 GO:0046983
Vivi4g02202 569 CDD bHLH_AtbHLH_like 379 431 IPR045239 -
Vivi4g02202 569 MobiDBLite consensus disorder prediction 207 251 - -
Vivi4g02202 569 SMART finulus 380 429 IPR011598 GO:0046983
Vivi4g02202 569 Pfam Helix-loop-helix DNA-binding domain 378 423 IPR011598 GO:0046983
Vivi4g02202 569 Coils Coil 413 440 - -
Vivi4g02202 569 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 149 559 IPR044658 -
Vivi4g02202 569 Gene3D - 362 449 IPR036638 GO:0046983
Vivi4g02202 569 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 441 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02202 Vivi-Chr4 108944171 108948126 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02202 63 560 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 38.060 3.64e-81 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vivi4g02202 HLH 4.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02202 - - vvo:131631482 979.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02202 4 108944171 108948126 Vivi4g02202 4 108944171 108948126 ECH
Vivi4g02202 4 108944171 108948126 Vivi4g02202 4 108944171 108948126 PCT