Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02164 ATGGAACGTCGCGTTGGAAATAAGTATCGTCTTGTTCGTAAGATCGGTAGTGGTTCGTTTGGGGAGATCTATTTAGGTACTAATATTCAAACTAACGAAGATGTTGGAGTTAAGCTTGAAAATGTCAGAACGAAGAATCCTCAGTTGCTGTATGAGTCCAAGTTGTACAGAATACTACAAGGAGAGCCTGGGATTCCAAATATTAAATGGTTTGGAGTGGATGGAGATTACAATGTTCTAGTAATGGATCTGCTTGGACCTAGTCTAGAAGAGATGTTTAACTTCTGTAATAGAAAGCTCTCGCTAAAGACAGTTCTCATGCTTGCTGAGCAAATGATCAAACGTGTTGAGTTTGTTCATTCTAAATCGTTTCTCCATCGGGATATCAAACCAGATAATTTCCTCATGGGCTTGGGAAAGCGGGAAAACCAGGTTTACTGTATTGATTTTGGTTTAGCAAAGAAATATAGAGATAGTACAACCCATCGACACATTCCTTACAGGGAAAATAAGAATTTGACTGGAACTGCAAGATATGCTAGCATGAATACCCACCTTGGCATTGAGCAAAGTCGAAGAGATGATTTAGAGTCTATTGGTTATGTCTTGATGTACTTCCTGAGAGGAAGTCTCCCATGGCAAGGACTTCAAGCAAGAACCAAGAGAGAAAAGTACGAGAAAATTAGTGAAAAGAAGGTTTCTACTTCGATTGAGGCCTTGTGTCAAGGTTATCCAACAGAATTTGCGTCATACTTCCATTATTGCCGGTCATTAAGGTTTGATGACAGACCAGATTATGCTTACCTCAAAAGAATATTCCGCGACCTGTTTATCCGTGAAGGATTCCAGTCTGATTACGTCTTTGATTGGACTATCTTGAAATATCAGCAATCACAGCTAATCACTCCTCCAGCACGTGGTATTGGGCCTGGTGCTGGAACTAGTTCTGGAGTGCCTCTTGCTATGACTAATGCTAACCGACACGCCGGAAGGGAAGAAGGGCGTCCTCCTGGTTTGGTTTCAGGAGACTCTACAAGACGACGAATGTCGGGGCCCATTTTAAATTCTGTAAATATGTCAAAGCATAAAAATCCAACCTCTAGTGACGCTGCTGTTAGTAAGGAGGTTATGTTATCAAATGCCAATGTCTTGGGCGAATCAAGTGGGTCATCAAGGCGAGTTGCTGATAGTAGTAGCCGCAATCCATTTGGTGGCGCTGATTCAGATCTCCGTGCTCGTGCTTCTGAAAGTATCCGTGGAAAAGCACACATAAGTTCAAGTGGACAAAGAGGTTCACACATTGGATCGTCAGATCCAAATAGAGTAGCAGCATCTTCTAATAATGGTTCTCATGTCAAGAATTATGAAACCGCAGTCAAGGGCATGGAGGGTTTGAAATTAAAAAACGTCGACTCCCATTAA 1422 0.4184 MERRVGNKYRLVRKIGSGSFGEIYLGTNIQTNEDVGVKLENVRTKNPQLLYESKLYRILQGEPGIPNIKWFGVDGDYNVLVMDLLGPSLEEMFNFCNRKLSLKTVLMLAEQMIKRVEFVHSKSFLHRDIKPDNFLMGLGKRENQVYCIDFGLAKKYRDSTTHRHIPYRENKNLTGTARYASMNTHLGIEQSRRDDLESIGYVLMYFLRGSLPWQGLQARTKREKYEKISEKKVSTSIEALCQGYPTEFASYFHYCRSLRFDDRPDYAYLKRIFRDLFIREGFQSDYVFDWTILKYQQSQLITPPARGIGPGAGTSSGVPLAMTNANRHAGREEGRPPGLVSGDSTRRRMSGPILNSVNMSKHKNPTSSDAAVSKEVMLSNANVLGESSGSSRRVADSSSRNPFGGADSDLRARASESIRGKAHISSSGQRGSHIGSSDPNRVAASSNNGSHVKNYETAVKGMEGLKLKNVDSH 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02164 473 MobiDBLite consensus disorder prediction 383 404 - -
Vivi4g02164 473 SMART serkin_6 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02164 473 CDD STKc_CK1_delta_epsilon 8 282 - -
Vivi4g02164 473 MobiDBLite consensus disorder prediction 348 371 - -
Vivi4g02164 473 MobiDBLite consensus disorder prediction 383 454 - -
Vivi4g02164 473 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Vivi4g02164 473 FunFam Putative Casein kinase I 1 85 - -
Vivi4g02164 473 Gene3D Transferase(Phosphotransferase) domain 1 1 305 - -
Vivi4g02164 473 PANTHER CASEIN KINASE-RELATED 7 378 - -
Vivi4g02164 473 MobiDBLite consensus disorder prediction 420 454 - -
Vivi4g02164 473 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02164 473 SUPERFAMILY Protein kinase-like (PK-like) 5 290 IPR011009 -
Vivi4g02164 473 FunFam Casein kinase I 1 304 - -
Vivi4g02164 473 Pfam Protein kinase domain 9 224 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02164 473 MobiDBLite consensus disorder prediction 327 371 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02164 Vivi-Chr4 106809914 106816385 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02164 9 217 EF-hand Containing Proteins AT2G17290 28.634 6.01e-12 65.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Vivi4g02164 Pkinase 3.9e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02164 K02218 - gmx:100785851 740.725