Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02136 ATGGAGGAAATAACTTCGACGGTTTCGGTGCCATTTCCACTTGGGAATTTAATATCAAAAGAGTCAGCAGTGACAACACAAATGGAAATATCTAGTTTAAAGCTTATGGCAAATACTGCAACTGTATTGATATTAAATCCTGCTTCCGTCGAGGATTGTCAATCGTTTTCTGTTGGAAGTGAAGAGGACGTCGACATGTATATTAGTCCACAACAAAACCAAATATCAGTGTCTTTGGAGGTTAAGGAGAATCAAGTTGGAGCTGAAGTGGTCTCTGAAATGGTTCATGAAAGTGACACTAGCGGAAGCTATGAAGATGAGTTCAAAATACATAACGATTTTCAGCGTGTACATAATCCATCCTCTCAGTCTGCAATTTTGAGGACTAATTTGCCTGAAATGAACACACCGAATACTATCATGGTTGATGATGATATCAATGATATGTCTAGTTTGAACGAGACGACGAAGAACCTGGCTTCTGTTGTGACAAACTGCGAGAGTGAAGGTGGAAGTAAATCAGATGGTCCTGATTCAAAGCCGATTGCTGCTGTTCATGAGACGCTAGAGAAGCAAACAAGCACAACAAGCTGTGATAATGGTTTGGAATTGGGAGAAACTCCTCTTTATGGTTTCTCATCAGTTATTGGAATGAGACAAGAGATGGAAGATGCTATTGTTATTAAGCCTCAACTTTTTCAAGTACCTTCTATGTTGCTAATGGAGGACCAAGTGAATGAAAACACAAAACACTTACTGGCACACTTTTTTGGTGTCTATGACGGACATGGAGGAAGTCAGGTTGCCAATTACTGCCAGAAACATCTTCATTCGGTTTTGGTTGAGGAGATAGAAGCTGCGGAATCCAGTTTATCCGAAAATAATGAAAAAGACAATCGGCAGGACCGATGGAAGAAAGTACTCACCAATTGCTTTCAAAAAGTAGACGATAAGATTGTAGGAATTGATGAAGCTAATCGTGAAAAAAGCGGTAATGATGGATCTGAGTCAACTACCGAAGAAACTCTTGCTCCCGAGACTGTTGGATCCACTGCACTGGTTGCAATTTTGACTCGAACCCACATAATAGTCGCGAATTGTGGGGATTCACGAGCGGTCTTGTGTCGAGGAAAAGAAGCACTGCCATTGTCTACTGACCATAAACCTAATAGAGAGGGTGAATGGGAAAGGATAGAAGCCGCCGGAGGAAAGATCATACAATGGAATGGATACCGAGTTCTCGGTGTTTTGGCAGTGTCAAGGTCAATTGGTGACAAATACTTGAAACCATGGATAATACCAGATCCAGAAGTCACAATTGCCCTCCGAGAAAAAAACGACGAATGTCTTATTCTAGCGAGTGATGGTTTATGGGATGTAATGACAAATGAAGAAGCCTGCGAGATTGCTCGAAAGCGAATCCTTATTTGGCATAAGAAGAACGGAACCAATGTCTCAACCGGACAAAGCGACGGAGTTAATCCTGCAGCTCAGTATGCAGCAGAGTATCTATCAAAACTTGCTCTTCAAAGAGGAAGCAAAGATAACATCTCAGTTATTGTTATAGACTTGAAACCTCAAAGAAATATCAAGAGAAAAGCATAA 1605 0.41 MEEITSTVSVPFPLGNLISKESAVTTQMEISSLKLMANTATVLILNPASVEDCQSFSVGSEEDVDMYISPQQNQISVSLEVKENQVGAEVVSEMVHESDTSGSYEDEFKIHNDFQRVHNPSSQSAILRTNLPEMNTPNTIMVDDDINDMSSLNETTKNLASVVTNCESEGGSKSDGPDSKPIAAVHETLEKQTSTTSCDNGLELGETPLYGFSSVIGMRQEMEDAIVIKPQLFQVPSMLLMEDQVNENTKHLLAHFFGVYDGHGGSQVANYCQKHLHSVLVEEIEAAESSLSENNEKDNRQDRWKKVLTNCFQKVDDKIVGIDEANREKSGNDGSESTTEETLAPETVGSTALVAILTRTHIIVANCGDSRAVLCRGKEALPLSTDHKPNREGEWERIEAAGGKIIQWNGYRVLGVLAVSRSIGDKYLKPWIIPDPEVTIALREKNDECLILASDGLWDVMTNEEACEIARKRILIWHKKNGTNVSTGQSDGVNPAAQYAAEYLSKLALQRGSKDNISVIVIDLKPQRNIKRKA 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02136 534 SMART PP2C_4 199 522 IPR001932 -
Vivi4g02136 534 Gene3D - 196 534 IPR036457 -
Vivi4g02136 534 SUPERFAMILY PP2C-like 208 526 IPR036457 -
Vivi4g02136 534 ProSiteProfiles PPM-type phosphatase domain profile. 209 524 IPR001932 -
Vivi4g02136 534 FunFam Protein phosphatase 2C 51 203 532 - -
Vivi4g02136 534 Coils Coil 281 301 - -
Vivi4g02136 534 ProSitePatterns PPM-type phosphatase domain signature. 256 264 IPR000222 GO:0043169
Vivi4g02136 534 Pfam Protein phosphatase 2C 211 517 IPR001932 -
Vivi4g02136 534 MobiDBLite consensus disorder prediction 323 346 - -
Vivi4g02136 534 CDD PP2Cc 210 524 IPR001932 -
Vivi4g02136 534 PANTHER PROTEIN PHOSPHATASE 172 524 IPR015655 GO:0004722|GO:0006470
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02136 Vivi-Chr4 105628157 105631474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02136 203 534 PP2C-type Phosphatase Gene Family AT1G17550 56.587 5.14e-133 394
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02136 K14497 - gmx:100812974 587.415