Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02108 ATGCTTACATGCATAGCACGTCCGAAGAAACTCGGCGACGACTCACTGAGTCACGGCGACGATTCAGACTCAAACACCAATGCAAAGAACGTAAAATCGCTGACGTGTCAGATAAAAGACATGGCGTTAAAAGCCTCCGGTGTTTACAAACACTGTAATCCATGCGCGCCGGCGAGTCGGTTGAGGACCGGTAATTCGGAGTCGGAAACTGACTCGGAGAAGTTTCGGAGGACGAGGACATGGGGGAAGGAGATGGAGGCGAGGTTGAAAGGGATCTCGAGTGGAGAAGGAACGCCGAGTTCGTCTTCGTCGTCGTTCGGCGGTGGAAGTGGTCGGAGAGTGGTGGTTTTGGAGGAGGAAGAAGGGAAGGAGTGGGTGGCGCAAGTGGAGCCTGGCGTTTTGATTACTTTTGTGTCGCTTACTCGTGGCGGGAATGATCTGAAGCGGATACGGTTCAGTCGCGATACATTTAACAAATGGCAAGCTCAAAGATGGTGGGCAGAGAACTATGACAAAGTCATGGAACTTTACAATGTTCAAAGGCTTAACCGCCAAGCCTTCCCGTTACCAACTCCAGCAAGATCTGAAGATGAGAGTTCAAAGCGTGAATCAATAGCCGACAGCCCAGTGACACCTCCGTTGACCAAGGAACAACTATCACGCAATTTATACCGACCAACAGGAACGGGAATGGGATACTCATCCTCAGATTCCTTTGATCAACACTCATTGCAGTCCAAACATTATCAGTATGACTTAAGTGGAATGAACTCAACTCCAAAGGTTTCAACCATTAGTGCTGCAAAGACAGATATATCATCAATGGCTGCTTCCATAAGAAGTAGCTCTTCCAGAGAAGCTGATCGCTCTGGCGATTTATCAATGAGCAATGCTAGTGATCCGGATAGTGAATGGGTCGAGGAGGATGAACCTGGTGTTTACATTACTATCAGGTCTCTGCCAGGTGGTAAAAGGGAGATCAGAAGAGTCAGGTTCAGTCGAGAAAAATTCGGGGAGGTGCATGCTAGACTATGGTGGGAAGAGAACCGCGCCAGAGTACATGAACAATACTTGTGA 1077 0.4856 MLTCIARPKKLGDDSLSHGDDSDSNTNAKNVKSLTCQIKDMALKASGVYKHCNPCAPASRLRTGNSESETDSEKFRRTRTWGKEMEARLKGISSGEGTPSSSSSSFGGGSGRRVVVLEEEEGKEWVAQVEPGVLITFVSLTRGGNDLKRIRFSRDTFNKWQAQRWWAENYDKVMELYNVQRLNRQAFPLPTPARSEDESSKRESIADSPVTPPLTKEQLSRNLYRPTGTGMGYSSSDSFDQHSLQSKHYQYDLSGMNSTPKVSTISAAKTDISSMAASIRSSSSREADRSGDLSMSNASDPDSEWVEEDEPGVYITIRSLPGGKREIRRVRFSREKFGEVHARLWWEENRARVHEQYL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02108 358 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 358 IPR044532 -
Vivi4g02108 358 MobiDBLite consensus disorder prediction 188 239 - -
Vivi4g02108 358 ProSiteProfiles BRX domain profile. 123 178 IPR013591 -
Vivi4g02108 358 MobiDBLite consensus disorder prediction 211 239 - -
Vivi4g02108 358 ProSiteProfiles BRX domain profile. 303 358 IPR013591 -
Vivi4g02108 358 MobiDBLite consensus disorder prediction 275 307 - -
Vivi4g02108 358 MobiDBLite consensus disorder prediction 275 301 - -
Vivi4g02108 358 Pfam Transcription factor BRX N-terminal domain 31 55 IPR027988 -
Vivi4g02108 358 MobiDBLite consensus disorder prediction 1 28 - -
Vivi4g02108 358 MobiDBLite consensus disorder prediction 94 109 - -
Vivi4g02108 358 MobiDBLite consensus disorder prediction 90 110 - -
Vivi4g02108 358 Pfam Transcription factor regulating root and shoot growth via Pin3 303 357 IPR013591 -
Vivi4g02108 358 Pfam Transcription factor regulating root and shoot growth via Pin3 123 177 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02108 Vivi-Chr4 103857993 103865238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02108 1 358 Major Intrinsic Protein MIP AT1G31880 44.385 2.09e-87 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02108 - - cit:102610534 486.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02108 4 103857993 103865238 Vivi4g02108 4 103857993 103865238 ECH
Vivi4g02108 4 103857993 103865238 Vivi4g02108 4 103857993 103865238 PCT