Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02093 ATGGAAGAACAAAAAACCGTGAAAAACAACAAAACGACAAATAACGAGGTTGTTCTTCGAATTTCAAACAACCAAGAAATCAGAGATTTTGAACGCACCCATGTTGGTGAAACCAGTTCTCATTCTAAAGGGTCTCATGCAGAAGAAGAACTCACAGAGCTTGAGAATCTCAGAAGCAGTAATGACCAAGTTTCCACAACCACTTTCTTGGGTCGGTCTGAATTCTCAAAGCCAAAAGCTAGAATGGTGGAACCACCATTTCCAAAAGATGCAAACTTTGTAGCAGACAAGACTCAAATCAAGAGTTCCAATTCTCCAAACAAGAAGATTCTTCCAAGGGATGTTCCTGATGGAATTGGAACTGTCATTACTCCAAGAACTCCGTTGATTGGTACTCCAAAGAAAGGAGAAGAAGAAGAGGATGATGATGAGGAAGAAGAAGTTTACAAGACTGCAGAAATTGAAGTGAGTAAGAGATCTGGTAAGAAGATGAAACTAATGAATTGGATTGAGTTGTTTGCATTTGTTTTAATTTTAGGGTTTTTGATTGCAAGCTTAATGGTTCATAGATTGCAAGATAAGAAAATTTGGAGTTTAGAACTTTGGAAATGGTGTGTGCTTACATTAGTTATCATCTCTGGTAGATTAGTCACTAGTTGGTTTATGAATGTTCTGGTTTTCTTAATCGAAAGAAATTTCTTGTTTAAGAAGAAAGTCTTGTATTTTGTTTATGGTGTTAGGAAGAGTGTTCAAGCATTTATATGGTTGAGTTTGGTGCTTTTGGCATGGAGTTTAGTTTTTCATCATGGAGTTAAGAGAACAAGAAAAGTTACTAGGATTCTTGGTTACATCACAAAAGCACTTGGTTCTTTTGTTATTTCGGCCGCTATATGGTTGGCGAAGACTTTGTTGATTAAGCTATTGTCTTCGCATTTTCAGTCGACTAGGTTTTTTGATAGGGTTCAAGAATCGATTTTTCATCAGTATATTCTTAGGACTCTTTCTGGTCCTCCTTTGATGGAGATGGCGGAAATGGTGGGGAAGAGTTCGAGTAGGGGGCGGATTAGTTTCCAGACGTTGGTTAGAGATAATGAGAAGAAAGGGAAGAAAGAACAAGCGCAAGTTATTGATGTGGAGAAGCTTAAGAAAATGAAACAAAAGAAAGTTTCGGCTTGGACTATGAAAGGGTTGGTTGATGTCATTAGGAGTTCTGGATTATCTACCATTAGTTATACGCCGGAGAGTATCTATGAAGAAGAGAGTGATGCGAAAGATAGTGAAATTACTAGTGAGTGGGAAGCAAAGGCGGCGGCTTATCGGATTTTCAGGAATGTTGCTAAGCCAGGAAGCAAGTACATTGAGAAGGAAGATCTATTGCGGTTTATGAAAATCGAAGAAGTGGAAAATTTGCTTCCACTATTTGAAGGAGCAGTTGAGACTGGAAGAATTAAGAGGAAGTCTCTCAAGAACTGGCTGGTGAAAGTCTACCTAGAACGCCAATCACTTGTACATTCACTAAACGATGCCAAAACAGCTGTTGATGAATTGAATAACATTGCTTCTGCAATTGTCCTTGTTTTGGCCATCATTGTGTTGTTGCTTGTGATGGGATTCTTAACAACCCAAGTTCTTGTCTTCATTTCATCACAGCTTTTACTTGTGGCGTTTGTGTTTGGCAACACAGCTAAGACAGTATTTGAAGCTATTATATTTGTTTTCGTGATGCATCCGTTTGATGTCGGGGATCGTTGTGTCATCGATGGTGTTCAGATGATTGTAGAAGAGATGAACATATTGACTACAATATTTTTGAGATACGACAATGAAAAGATATTCTATCCGAATTCAGTTCTTGCAACCAAGCCAATCAGTAACTTCTACCGGAGTCCAGAAATGAGTGATTCTGTTGAATTTTCTGTTGATGTTTCAACTTCAATACAAAGCATTGGAGCTTTAAAAGCTAGAATAAAAGAATACTTGGAGAGTAGGCCACAACATTGGCGTCCAAACCATAGTGTATTGGTTAAGGATATTGAGAATGTGAACAAGATGAAAATGGTTCTTTACGTTACTCACACAATAAACTTTCAGAATTCCAGCGACAGGAACAACAGAAGATCTGAATTAGTTCTCGAGTTAAAGAGAATTTTTGAAGATCTTGATATTAAATATAATTTGCTGCCACAAGAAGTTCGTCTCAGTCATGTAAGATCACAAGACCATAAAGCACAGACAGTTTGA 2241 0.3784 MEEQKTVKNNKTTNNEVVLRISNNQEIRDFERTHVGETSSHSKGSHAEEELTELENLRSSNDQVSTTTFLGRSEFSKPKARMVEPPFPKDANFVADKTQIKSSNSPNKKILPRDVPDGIGTVITPRTPLIGTPKKGEEEEDDDEEEEVYKTAEIEVSKRSGKKMKLMNWIELFAFVLILGFLIASLMVHRLQDKKIWSLELWKWCVLTLVIISGRLVTSWFMNVLVFLIERNFLFKKKVLYFVYGVRKSVQAFIWLSLVLLAWSLVFHHGVKRTRKVTRILGYITKALGSFVISAAIWLAKTLLIKLLSSHFQSTRFFDRVQESIFHQYILRTLSGPPLMEMAEMVGKSSSRGRISFQTLVRDNEKKGKKEQAQVIDVEKLKKMKQKKVSAWTMKGLVDVIRSSGLSTISYTPESIYEEESDAKDSEITSEWEAKAAAYRIFRNVAKPGSKYIEKEDLLRFMKIEEVENLLPLFEGAVETGRIKRKSLKNWLVKVYLERQSLVHSLNDAKTAVDELNNIASAIVLVLAIIVLLLVMGFLTTQVLVFISSQLLLVAFVFGNTAKTVFEAIIFVFVMHPFDVGDRCVIDGVQMIVEEMNILTTIFLRYDNEKIFYPNSVLATKPISNFYRSPEMSDSVEFSVDVSTSIQSIGALKARIKEYLESRPQHWRPNHSVLVKDIENVNKMKMVLYVTHTINFQNSSDRNNRRSELVLELKRIFEDLDIKYNLLPQEVRLSHVRSQDHKAQTV 746
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02093 746 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 7 736 IPR016688 -
Vivi4g02093 746 Gene3D - 577 626 IPR023408 -
Vivi4g02093 746 MobiDBLite consensus disorder prediction 31 56 - -
Vivi4g02093 746 FunFam Predicted mechanosensitive ion channel 577 626 - -
Vivi4g02093 746 MobiDBLite consensus disorder prediction 31 65 - -
Vivi4g02093 746 MobiDBLite consensus disorder prediction 122 145 - -
Vivi4g02093 746 SUPERFAMILY Sm-like ribonucleoproteins 567 626 IPR010920 -
Vivi4g02093 746 PIRSF Memb_At2g17000 2 745 IPR016688 -
Vivi4g02093 746 Pfam Mechanosensitive ion channel 517 723 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02093 Vivi-Chr4 102325582 102328911 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02093 70 734 Mechanosensitive Ion Channel Family AT5G12080 52.897 0.0 716
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02093 K22048 - gmx:100777332 1027.31