Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02043 ATGACAATGAAATCTATACTAAAATCGATTCTCCCTTCAACATGTTTCCATGGAGAGTATCCATCACCAAAGCCAAAGAAAGTAGTATCAACAAAGCCAAGAAACTCTTCAACCTCAACCTCAACTCATAGGATTTCTATAGAAGATTTGAGTTATCAAAACACGACTTTATCCGAAGAGTTAACTAACTCTCTTTCTCTAGCAGGGTCTAATCTCTATAAGTTTACCGTTGTTGAACTTAAAGCTATAACACAGCACTTTTCTTCAAGTAATTTTCTTGGCGAAGGTGGGTTCGGACCGGTTCATAAAGGGTTTATCGATGATAGGGTTAGGCCCGGTTTGAAAGCGCAGCCTGTTGCTGTTAAACTCTTGGACTTGGAAAGCAAGCAAGGTCATAAAGAGTGGCTGACTGAAGTTGTTGTTCTTGGACAATTAAGGCATCAACATCTTGTGAAGCTAATTGGATATTGTTGTGAAGATGAACATAGGCTTTTGGTCTATGAATATTTACCAAGAGGAAGTTTGGAAAATCAGTTATTTAGAAGATTTTCAGCATCATTACCATGGTCAACAAGAATGAAAATTGCTGTTGGAGCTGCAAAAGGTTTAGCATTTCTTCATGAAGCTGAGCAACCTGTTATTTATAGAGATTTCAAAGCTTCAAACATCTTGCTAGACTCTGACTATAATGCAAAACTCTCTGACTTTGGGTTGGCAAAAGATGGACCTGAAGGAGATGACACCCACGTTTCAACAAGAGTTATGGGTACTCAAGGCTATGCTGCTCCTGAATATGTCATGACAGGTCATTTGACAGCTAAGAGTGATGTGTATAGCTTTGGAGTTGTTTTGTTGGAATTGCTAACAGGGAGAAAGTCAGTGGACAAAAACCGTCCTGCAAGGGAACAAAACCTAGTTGATTGGGCAAGACCAATGTTAATTGATGCAAGAAAACTTGTTAAAATAATGGATCCAAAACTTGAAGGACAGTACTCTGAAATGGGTACTAAAAAAGCAGCTTCATTGGCTTATCAATGTCTTAGCCATAGGCCAAAGAGTAGGCCTACCATGAGCAATGTGGTTAAGATCTTGGAACCCTTGCAAGATTTTGATGATATTCCAATTGGACCCTTTGTTTACACTGTTCCAGTTGAGAATAATGAAGTGGTTAAAGAAAAAGATCAAGCAAAGGAAGATGAATCGACGAAGGAGAGGAAAAGAGAAAATGGTCAATATCGTAGGAATGGTCATAGGCATCACCCGCTTAAATCTCCTAGGTCGCCGATGCCCCAATCGCAATCACGGCCGCAGTCACAGCCACGGCCTCGTGTGCGGATAGACAGGCATCAAAATTATAGAGGAAGTGCGTTGAATTCTCCTTCTCCTTCCCCTTCGCCGCAGCCACATAAAAAAAGCTATGAAACTTAG 1428 0.4041 MTMKSILKSILPSTCFHGEYPSPKPKKVVSTKPRNSSTSTSTHRISIEDLSYQNTTLSEELTNSLSLAGSNLYKFTVVELKAITQHFSSSNFLGEGGFGPVHKGFIDDRVRPGLKAQPVAVKLLDLESKQGHKEWLTEVVVLGQLRHQHLVKLIGYCCEDEHRLLVYEYLPRGSLENQLFRRFSASLPWSTRMKIAVGAAKGLAFLHEAEQPVIYRDFKASNILLDSDYNAKLSDFGLAKDGPEGDDTHVSTRVMGTQGYAAPEYVMTGHLTAKSDVYSFGVVLLELLTGRKSVDKNRPAREQNLVDWARPMLIDARKLVKIMDPKLEGQYSEMGTKKAASLAYQCLSHRPKSRPTMSNVVKILEPLQDFDDIPIGPFVYTVPVENNEVVKEKDQAKEDESTKERKRENGQYRRNGHRHHPLKSPRSPMPQSQSRPQSQPRPRVRIDRHQNYRGSALNSPSPSPSPQPHKKSYET 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02043 475 Gene3D Transferase(Phosphotransferase) domain 1 170 373 - -
Vivi4g02043 475 ProSitePatterns Serine/Threonine protein kinases active-site signature. 213 225 IPR008271 GO:0004672|GO:0006468
Vivi4g02043 475 Pfam Protein tyrosine and serine/threonine kinase 91 364 IPR001245 GO:0004672|GO:0006468
Vivi4g02043 475 MobiDBLite consensus disorder prediction 22 43 - -
Vivi4g02043 475 FunFam Serine/threonine-protein kinase BIK1 53 169 - -
Vivi4g02043 475 PANTHER OS01G0588500 PROTEIN-RELATED 42 368 - -
Vivi4g02043 475 MobiDBLite consensus disorder prediction 390 411 - -
Vivi4g02043 475 SUPERFAMILY Protein kinase-like (PK-like) 69 365 IPR011009 -
Vivi4g02043 475 CDD STKc_IRAK 93 367 - -
Vivi4g02043 475 MobiDBLite consensus disorder prediction 29 43 - -
Vivi4g02043 475 Gene3D Phosphorylase Kinase; domain 1 47 169 - -
Vivi4g02043 475 ProSiteProfiles Protein kinase domain profile. 87 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g02043 475 MobiDBLite consensus disorder prediction 390 475 - -
Vivi4g02043 475 MobiDBLite consensus disorder prediction 426 440 - -
Vivi4g02043 475 FunFam Probable serine/threonine-protein kinase PBL8 170 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02043 Vivi-Chr4 98810150 98813159 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02043 14 364 Glycoside Hydrolase AT3G07070 46.944 6.49e-102 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vivi4g02043 PK_Tyr_Ser-Thr 5.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02043 - - psat:127135798 827.009