Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02033 ATGGAGAAGAAATCACCGTTACCGTTGAAAAATGCCATTGCGAACAAGAAGAAAGAGCAATTGTGTAGCAAGGAGTCTCTGGTGAAGATTCTAAGATGGCATTTTAGGTATCCTGATTTTAGGGGTATGCAATTGGAAGCTATTCAAGCTGTGCTCTCAGGAAGAGATTGTTTTTGTCTTATGCCAACTGGAGGTGGCAAGTCAATGTGTTATCAAATTCCTGCATTGGCAAAAACAGGAATTGTGCTTGTAGTTTGTCCTTTAATAGCCTTAATGGAAAACCAAGTAATGGCGCTAAAGGAGAAAGGAATTGCTGCTGAGTTTCTTTCATCAACAAAAACGGCAGATGCAAAAAATAAGATTCACGAGGACCTTGATTCTGGCAAACCGTCTACAAGGCTGCTATATGTGACTCCAGAGTTGATAGCAACCCCAGGGTTTATGTCAAAGCTGAAAAAGATTTATTTCAGGGGGTTGCTAAGTCTCATTGCAATTGACGAGGCACATTGCATCTCTTCTTGGGGCCATGATTTCAGACCTAGCTACCGTAAGCTTTCAACTCTGAGAAGTCACCTACCAGATGTACCAATATTAGCTCTGACTGCTACTGCTGTTCCTAAGGTTCAGAAGGATGTAGTGGACTCCTTGCAGATGCAAAATGCATTAATGTTAAAGACTTCTTTTAATCGTCCTAATATATATTATGAAGTTAGATATAAAGATCTACTGGAAGATGCTTATGCTGATTTATCTGATACACTCAAATCTATGGGAGATGTCTGTGCGATAATTTATTGCCTTGAACGTTCCATGTGTGATGACTTGTCAGCTCATTTATCTCAAAGCGGCATTTCTTGTGCAGCTTATCATGCAGGACTGAATAATAAAATGCGAACTTCCGTGCTAGATGATTGGATTTCTTCAAAAACACAAGTTGTTGTTGCCACTGTTGCTTTTGGGTATGGCATTGATAGAAAGGATGTGAGAATTGTGTGCCACTTCAATATTCCGAAGTCAATGGAAGCATTCTATCAAGAGTCAGGCAGAGCTGGTCGTGATCAGTTGCCCTCTACAAGTCTCTTGTACTACGGAGTAGATGATCGCAAAAAAATGGAATTTATATTAAGAAACTCAGGTAGCAAGAAATCACAATCATCAAACTCACAAGAAGAATCAACCAGAATGTCCTTGACTGCTTTCAATCAGATGCTTGAATATTGTGAGGGATCTGGATGTCGTAGGAAAACGATTCTCGAGAGTTTTGGAGAGCAGGTAACAGCCTCACTATGTGGAAAAACATGTGACGCCTGTAGACACCCAAACTTAGTTGCCAGAAATTTGGAGGATCTCACTGCTGCTTGTTCTCTACGCCAGAAAGGCAGTTCTCGAGTTTTCATCACCAGTTCCTCTGATGCAATTGTTGGAGAACAGTTGTCTGAATTCTGGAATCGAGATGAGGAAGCAAGTGGATCAGAGGAAGATATTTCTGACTTAGATGAAGGTAATGAGGTTGTCAACAATCTAGCCCGGTCAAACGTTCAATCCAGACTGGGAATAAACGAAAAGCTTGATTTGCTACAGAGGGCCGAAGAAAAGTACTATCGAAATGAGAACACTAATAAACAGAGTAACAAAGTTGACAAGAATGCTATTTCTGATGCATTACGAGTGGCTAGCAGGCAGAGATTACAAAATGCTTTAAAACAGGCTCAGGAACGGCTTGGCTACTTATTCAGGTTTGAAATGGAAGCTTCGGCATCTCTTCTCGAAGATGAATGCTACAAGAAATATGGCAAGACTGGCAAATCCTTCTATTATTCCCAAGTGGCAAGTACTATCAGGTGGTTAACAACTACAAGTTCCGACAATCTAATGAACCGGCTTCGTGCAGCTGATGTTTCCTCATCATTGAATGTCTTCTCTGAAGTTGAACATTCCCTCACACCGCCACCTGCTTCGGCTCCTTGCGCAAAAGAAGAAACTAGCAATGAGGTCTCAGGAAATACCGTGACAGAAATAATCCCATGTGACGTGCCAACGGAAAATTCTTTTAATACAAACTTGCCACCAATACCATCCTTCTCTGAATTTGTAAACAGTAGGAAATCGAAAAGGGACCAATCAGGTGACACAAAAAAACACTCATCAAGAATAGAAAAGAAGATGAGGAAACAGTAG 2178 0.4091 MEKKSPLPLKNAIANKKKEQLCSKESLVKILRWHFRYPDFRGMQLEAIQAVLSGRDCFCLMPTGGGKSMCYQIPALAKTGIVLVVCPLIALMENQVMALKEKGIAAEFLSSTKTADAKNKIHEDLDSGKPSTRLLYVTPELIATPGFMSKLKKIYFRGLLSLIAIDEAHCISSWGHDFRPSYRKLSTLRSHLPDVPILALTATAVPKVQKDVVDSLQMQNALMLKTSFNRPNIYYEVRYKDLLEDAYADLSDTLKSMGDVCAIIYCLERSMCDDLSAHLSQSGISCAAYHAGLNNKMRTSVLDDWISSKTQVVVATVAFGYGIDRKDVRIVCHFNIPKSMEAFYQESGRAGRDQLPSTSLLYYGVDDRKKMEFILRNSGSKKSQSSNSQEESTRMSLTAFNQMLEYCEGSGCRRKTILESFGEQVTASLCGKTCDACRHPNLVARNLEDLTAACSLRQKGSSRVFITSSSDAIVGEQLSEFWNRDEEASGSEEDISDLDEGNEVVNNLARSNVQSRLGINEKLDLLQRAEEKYYRNENTNKQSNKVDKNAISDALRVASRQRLQNALKQAQERLGYLFRFEMEASASLLEDECYKKYGKTGKSFYYSQVASTIRWLTTTSSDNLMNRLRAADVSSSLNVFSEVEHSLTPPPASAPCAKEETSNEVSGNTVTEIIPCDVPTENSFNTNLPPIPSFSEFVNSRKSKRDQSGDTKKHSSRIEKKMRKQ 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02033 725 CDD DEXHc_RecQ 29 229 - -
Vivi4g02033 725 Gene3D - 3 229 IPR027417 -
Vivi4g02033 725 FunFam RecQ family DNA helicase 230 455 - -
Vivi4g02033 725 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 80 375 IPR027417 -
Vivi4g02033 725 NCBIfam RecQ family ATP-dependent DNA helicase 29 450 IPR004589 GO:0004386|GO:0006310
Vivi4g02033 725 MobiDBLite consensus disorder prediction 699 716 - -
Vivi4g02033 725 FunFam ATP-dependent DNA helicase 21 229 - -
Vivi4g02033 725 Pfam Helicase conserved C-terminal domain 258 352 IPR001650 -
Vivi4g02033 725 MobiDBLite consensus disorder prediction 685 725 - -
Vivi4g02033 725 MobiDBLite consensus disorder prediction 646 667 - -
Vivi4g02033 725 SMART ultradead3 36 238 IPR014001 -
Vivi4g02033 725 Gene3D - 230 456 IPR027417 -
Vivi4g02033 725 Pfam DEAD/DEAH box helicase 43 209 IPR011545 GO:0003676|GO:0005524
Vivi4g02033 725 CDD SF2_C_RecQ 230 363 - -
Vivi4g02033 725 SMART helicmild6 273 354 IPR001650 -
Vivi4g02033 725 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Vivi4g02033 725 Pfam RecQ zinc-binding 367 438 IPR032284 -
Vivi4g02033 725 PANTHER DNA HELICASE RECQ FAMILY MEMBER 16 571 - -
Vivi4g02033 725 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 253 394 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02033 Vivi-Chr4 97902836 97922273 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02033 24 377 Eukaryotic Initiation Factors Gene Family AT3G19760 23.280 2.62e-13 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02033 K10901 - gmx:100819601 1154.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g02033 4 97902836 97922273 Vivi4g02033 4 97902836 97922273 ECH