Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01987 ATGTCTACCTCATCGGAGCTCTCGGAAGTTTCCGGCCACAAACCGGCGAGGTCGCCGGAGAAGACAACTTTCTCCCAGACTTGCAGTTTACTGAGTCAGTATATCAAGGAAAAGGGGAGCTTCAAAGATCTTTCTCTCGGTATGTCATGCAACAACAACACCGAAACTACTGGGTGTGTTGAGAGTTCTTCTCAATTAGGAACAACTATGAACTTGTTTCCAACTATGGAAAATAACTTGGGACCAAAGAATCTTACTACCATGGATTTGTTCTCTCCACAAGCTTCCATGAACAACTCCAATGCTACTAAGGGACCTAAAGCTGCACAATTGACAATGTTTTACAATGGCCAAGTAATTGTATTCAACGATTTCCCTGCTGATAAAGCACAAGAGCTCATGGCTTTTGCTAACAAAGGAATCTCTGAAAGTCAGAACAACAATTCTTTGTACACTTACGCACAAAGCCAGCCTTCATTTCCTCCAAATTCGGTCAGAACTTCTGTTGACCCAATCGCCCCAATTGTTCCAACAGTGAACAACATCGTCCCTAGCACCTGCAACGGGCCGATTCTTGAACACCCTCAAGTGCTTTCCAGACCTAATGTTTGCGATCTTCCAATTATGAGGAAAGCTTCTCTTCATCGGTTCCTTGAGAAGAGAAAGGATAGAGTTGCTTCCAAATCACCATATCAGAGAACAAATGCAATGGAGAGTATTAACAAGCCAGGTGAAAACATGTCATGGCTTGTGGGTGCAAAATCAACTCAAATCTGA 777 0.4324 MSTSSELSEVSGHKPARSPEKTTFSQTCSLLSQYIKEKGSFKDLSLGMSCNNNTETTGCVESSSQLGTTMNLFPTMENNLGPKNLTTMDLFSPQASMNNSNATKGPKAAQLTMFYNGQVIVFNDFPADKAQELMAFANKGISESQNNNSLYTYAQSQPSFPPNSVRTSVDPIAPIVPTVNNIVPSTCNGPILEHPQVLSRPNVCDLPIMRKASLHRFLEKRKDRVASKSPYQRTNAMESINKPGENMSWLVGAKSTQI 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01987 258 ProSiteProfiles Tify domain profile. 104 139 IPR010399 -
Vivi4g01987 258 Pfam tify domain 106 138 IPR010399 -
Vivi4g01987 258 SMART tify_2 104 139 IPR010399 -
Vivi4g01987 258 MobiDBLite consensus disorder prediction 1 22 - -
Vivi4g01987 258 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 237 IPR040390 -
Vivi4g01987 258 Pfam Jas motif 207 232 IPR018467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01987 Vivi-Chr4 95146490 95148955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01987 1 250 Tify Gene Family AT1G19180 39.483 4.39e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vivi4g01987 tify 2.6e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01987 K13464 - gmx:100801449 295.819
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01987 4 95146490 95148955 Vivi4g01987 4 95146490 95148955 ECH
Vivi1g00814 1 17500550 17501458 Vivi4g01987 4 95146490 95148955 PCT