Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01985 ATGCAGCTAGCTTTTTCTTTCATCATCAGGACTTTTGTCTTCCTCCCACTCTTCTTAAGTGTTACTCCAGATGAAATAGACAAATCTTGTACACCTTTTAACTGCGGTAATTTCATTAACGTAACATATCCTTTTTGGAATTTTAACACTCAGCCAAGTTATTGCGGACATCCCGGATTTAAGCTTTATTGCCAAAATGGTCACTTGACCATTGAAATTAAGTCCCAAGAATTCCGTATTCTTCATCTAAACCAAACTTCTCAACTTTTAAGGATTTCTAGAGAAGACTTTTATGATTTAGATGCTAATCATAAAAGATATTGTCCTAAGGATTATATTAATGTGGACGTGGATTCGCATTTTTTCAACTACACTGCCAATAATGAAAACTATACTGCATTATATGACTGTGGCCCTTTTCCTTCATATTTGATTCCTGAAATTTCTGATGTCTTTCTTTGCCTAAAAGAGGACATAACACAGGAAGTATATGTAGTCCGAAATTCTAAATTGGCTGATTTTGTTACTATGAAGTGTAAAAATAGTATCACAATTCCGGGAATAAAATACAAAGATTCCAATTCCACGGATGCCGTGATGAGTTTTTTAGATAAAGGGTTTGAGGTTAAGTGGGGAGGAGTGGGAGAAGATAAATGTCATGCTTGCATAAGTTCAGGTGGAATATGTGGCTTTAAAAACTCAAAAAACACATGTCTCTTACACAGATCCTTGTCATCGAAAGTAGCTGCCGCAGGAACATGGAATTTGAAAAAGAGACTCCTTGTTGGTGTTATTTCTATGACATTGGCCACACTCGTTATTGCAATCATATATATTTATAGGCGCCGACACAGTAATCGCGATGTTGAATCAGATGCACAATCTGTGATACTGACTTCTCATCCGTCGAGACTAGAAAGTCAACGATTTGCTAGAAATAAATATTTTGGTGTTCAGTACTTTACATCTGATGATCTTAAGCAAGCCACAAATGATTTCTCAAAGCAAATAGGAGATGGGGCCGGAGGGACTGTATTTTATGGAGAATTACCTGATGGTCGTCGTATTGCGGTTAAGGAGATTCATAACAACCTTGGAGATGATCAATTCAATAATGAGCTCGATACCTTATCATATCTAGCTCATCCAAACCTGGTATCTTTATATGGATGCACTACTTCACAACTTCAAGAACCTATGATAGTATATGAGTATGTTTCCAATGGAACTGTAAATGAGCATCTTCAAGGTCAAAGAGAAACACATGGGAACCTACCGTGGAGCATCAGAATGAATATTGCCGTGGAGACCGCTAGTGCTTTGAAGTATCTTCATGCGTCTAATATTATCCATAGGGATATCAAAACTAGCAATATTCTTCTTGATGATGATCTTCATGTTAAACTAGCAGATTTTGGAATATCACGCATTTTTCCATCGGACCAAAGCCATGCCTTAACCGAACCAAGAGGGACTGTAGGTTATGTTGCTCCTGAATGCGTAGCCCATGAAGACCAAAAGCACTGTGAACTTACTTATAAAAGTGATGTATTCAACTTTGGAGTAGTATTGGTGGAGCTTATAACATCTCTCCCTGCTTATTATGATTTTAGACCTGTGAAAAATCTTCATGAAATGGCTATTACGAGAATCCAAAATGGAACAATGCATGAACTTGTGGACAGTACCCTTGGTTATGGTTCGGATCCCAATGTAGAGAAAATGATAAATCTTGTGATAAAGCTAGCAGGTGAGTGTTTACATGAATCCAGACAGGCAAGGCCTACCATGAATAAAGTGTGGCTAACTTTACAAGAAATTCAGCGTGTGGGTAAGAATGAAATGCAACATGATGACATGAACTTAGAAGGCACTAATGATGAGATTCAGTTGTTAAATCAATTCATGACCACCTAA 1917 0.3745 MQLAFSFIIRTFVFLPLFLSVTPDEIDKSCTPFNCGNFINVTYPFWNFNTQPSYCGHPGFKLYCQNGHLTIEIKSQEFRILHLNQTSQLLRISREDFYDLDANHKRYCPKDYINVDVDSHFFNYTANNENYTALYDCGPFPSYLIPEISDVFLCLKEDITQEVYVVRNSKLADFVTMKCKNSITIPGIKYKDSNSTDAVMSFLDKGFEVKWGGVGEDKCHACISSGGICGFKNSKNTCLLHRSLSSKVAAAGTWNLKKRLLVGVISMTLATLVIAIIYIYRRRHSNRDVESDAQSVILTSHPSRLESQRFARNKYFGVQYFTSDDLKQATNDFSKQIGDGAGGTVFYGELPDGRRIAVKEIHNNLGDDQFNNELDTLSYLAHPNLVSLYGCTTSQLQEPMIVYEYVSNGTVNEHLQGQRETHGNLPWSIRMNIAVETASALKYLHASNIIHRDIKTSNILLDDDLHVKLADFGISRIFPSDQSHALTEPRGTVGYVAPECVAHEDQKHCELTYKSDVFNFGVVLVELITSLPAYYDFRPVKNLHEMAITRIQNGTMHELVDSTLGYGSDPNVEKMINLVIKLAGECLHESRQARPTMNKVWLTLQEIQRVGKNEMQHDDMNLEGTNDEIQLLNQFMTT 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01985 638 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 10 622 IPR044652 GO:0004672
Vivi4g01985 638 SMART serkin_6 331 602 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01985 638 SUPERFAMILY Protein kinase-like (PK-like) 314 604 IPR011009 -
Vivi4g01985 638 ProSiteProfiles Protein kinase domain profile. 331 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01985 638 Gene3D Transferase(Phosphotransferase) domain 1 406 630 - -
Vivi4g01985 638 Pfam Wall-associated receptor kinase C-terminal 169 237 IPR032872 -
Vivi4g01985 638 Pfam Protein kinase domain 334 600 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01985 638 Gene3D Phosphorylase Kinase; domain 1 295 405 - -
Vivi4g01985 638 ProSitePatterns Protein kinases ATP-binding region signature. 337 359 IPR017441 GO:0005524
Vivi4g01985 638 Pfam Wall-associated receptor kinase galacturonan-binding 30 93 IPR025287 GO:0030247
Vivi4g01985 638 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01985 Vivi-Chr4 95111533 95116081 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01985 219 608 Receptor kinase-like Gene Family AT1G25390 42.356 6.83e-89 287
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Vivi4g01985 Pkinase 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01985 - - psat:127115365 610.912