Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01971 ATGGTGAAAACAAACGTGGAGAAACATGCGGCGGAACGATGTGATACATTGTTTCGAGGAGTGAGGAAGAGGAAGTGGGGAAAATATGTGTCGGAAATTAGATTACCAAACAGTCGTCAAAGAATATGGTTAGGCTCTTATGACACCGCCGAAAAAGCGGCGCGTGCATTTGACGCGGCAACGTTCTGCTTACGTGGCAGTGGTGCAAGGTTTAATTTCCCGAGTAATATTCCGGATATTGCGGGTGGAAGGTCTATGACCCATTCTGAGATTCAAGCAGCTGCCGCCCGTTTTGCCAATACGGTGCCCTGTAATGAGTATTTGGGTCGACCCGATAATACTCCAGATCTAACACCATCTTCCTCTGTGGAAACACCAATCACACCATTGTTGCCTATGGAGATGCCATCTCCTGCTCTCTCGGATGTTACAGTTCAAACGGAGAGTGATATATCATTATCAGATAACGAGTTGTTTAGAGATTTGTTTTCAGACACCGGATCGGGTTACACAATGTTTCCTGGGTTTGATGATTTTTGTGGCGATTTCTACGTGCCAGAGTTCTCAAATTTTGATTATGAAGAAGAGAACAAGGATGGGTTGATAATTCAAGAATCATTTTTATGGAGTTTCTAA 636 0.4387 MVKTNVEKHAAERCDTLFRGVRKRKWGKYVSEIRLPNSRQRIWLGSYDTAEKAARAFDAATFCLRGSGARFNFPSNIPDIAGGRSMTHSEIQAAAARFANTVPCNEYLGRPDNTPDLTPSSSVETPITPLLPMEMPSPALSDVTVQTESDISLSDNELFRDLFSDTGSGYTMFPGFDDFCGDFYVPEFSNFDYEEENKDGLIIQESFLWSF 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01971 211 CDD AP2 16 74 IPR001471 GO:0003700|GO:0006355
Vivi4g01971 211 SUPERFAMILY DNA-binding domain 17 75 IPR016177 GO:0003677
Vivi4g01971 211 Pfam AP2 domain 18 66 IPR001471 GO:0003700|GO:0006355
Vivi4g01971 211 ProSiteProfiles AP2/ERF domain profile. 17 74 IPR001471 GO:0003700|GO:0006355
Vivi4g01971 211 SMART rav1_2 17 80 IPR001471 GO:0003700|GO:0006355
Vivi4g01971 211 Gene3D AP2/ERF domain 17 76 IPR036955 GO:0003700|GO:0006355
Vivi4g01971 211 PRINTS Ethylene responsive element binding protein signature 40 56 IPR001471 GO:0003700|GO:0006355
Vivi4g01971 211 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Vivi4g01971 211 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 14 125 - -
Vivi4g01971 211 FunFam Ethylene-responsive transcription factor 2 16 75 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01971 Vivi-Chr4 93296427 93297416 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01971 18 211 AP2-EREBP Transcription Factor Family AT1G19210 43.781 9.93e-45 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vivi4g01971 AP2 1.5e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01971 - - mtr:11441685 288.5