Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01960 ATGTTGGCTTCCGACATGGGGCTAAAACAAAACCAACAACCTTCTGAATTCTTTTGCAAAACTCTAACAGCTAGTGACACTAGCACTCATGGTGGTTTTTCCGTGCCTCGTCGAGCCGCCGAGAAAATATTCCCACCTCTGGACTTTTCAATGCAACCACCAGCTCAGGAAATAGTGGCCAAAGATTTGCACGACACTACATGGACATTTAGACATATTTATCGCGGACAACCAAAGAGGCATCTATTGACTACCGGTTGGAGTGTCTTTGTTAGCACGAAAAGACTCTTTGCCGGAGATTCTGTTCTTTTTATTAGAGATGAAAAGCAGCAACTCCTTTTAGGTATAAAGAGGTCCAGTAGACAGCAACCAGCACTATCTTCATCGGTTATATCGAGTGACAGCATGCATATCGGCATTCTTGCTGCTGCGGCTCATGCTGCTTCAAATAACAGCCCATTTACTATATTTTATAATCCAAGGACCAGCCCGTGCGAATTTGTGATTCCATTGGCCAAGTATAATAAAGCCTTGTACACTCATGTTTCCCTTGGAATGAGATTCAGAATGATGTTTGAGACCGAGGACTCGGGAGTACGTAGATATATGGGTACAATCACTGGGATTAGTGACTTGGATCCTGTTCGATGGAAAAATTCACAATGGCGCAATCTTCAGGTTGGATGGGATGAATCAACAGCTGGAGAGCGTCCAAGCCGAGTTTCAATTTGGGATATTGAACCAGTTGTGACTCCTTTCTACATTTGCCCACCTCCGTTTTTTCGGCCAAAGTTTCCCAAACAACCAGGAATGCCAGAAGACGAGTCTGAAATCGAAAATGCTTTCAAGAGAGCTATGCCTTGGCTCGGAGATGAACTCGGCATGAAGGATGCCTCAAGTTCAATCTTCCCTGGTTTGAGTTTAGTACAATGGATGAGCATGCAGCAGAATAATAATAACAATAATCAGTTTTCTTCTCCTCAGTCAGCGCTTTTACCTCCATCCATGCTCTCATCAAACACACTTCACGGTAACGGTAGCCTTAACACCGATGATCCGTCCAAGATATTGAACTTTCAGTCCCCGGCTGCGCTCTCTGCTCCAAGTCTTCAATTTAACAAACCTAATTTACCAAACCAACAGCCCCCGACCTCGTGGGCCCAGCAGCAGCAACAGCAGCAGAAGATGCAATCATTGTTGCAAACGCCGTTAAACCAGCTGCAGCAACAACAGCAGCAGCAGCAGCAGAGGCAGCTGCAGCTGGCCGGAGCGCAAAATCTGCCGCAATCACAGCAACAACAGCCTCAACTAAATCAACATAATGCACAGCCGCCTCAACAACAACCGCAACAACAACACCAACAGCCGTGTCAAAACGCGACTATGAATAATGGCACAGTTGGTTCTAACCAGATTTCAAATCAATGTGTGCAGCAACAAGTAAACTACTCTCAGCTTCAGCAACAGTTACTCTCAGGAAGTATCCCAATGCAACAAAATTTCCAGTCCGTTGGCAAGAATGGGTCGATAATGACATCCTTACCACAAGACTCGCAATTTCAGCAACAGCAACAGATAGACCCGCAACAAGCTAGTCTCTTACAGCGGCAGCAGCAGCAAACTCAATTGCAACAATCTTCATTACAGTTATTGCAACAAAGCATGTTACAAAGGGCACCACAACAATCGCAAGCATCTCAAATTTTGCCGCAAAACATCTCAGACCAACAATCACAGATGCAGCTACTACAGAAGTTGCAACAGCAACAGCAGCAACAACAGCAGCAGCAACTGCTTTCCACGTCTTCCCCGCTTTTGCAGTCTCAGCTTCTACAGCAACAGAATACTCACCAGCAATTGTCGCAGCTGCCGATGTCTCAACATCAGCCTCAACAGCTTGGCAACAATGCGTTTTCAATGGAGAAGCTTCTCAACAACAATTACTCTTCTTCACCTCTCATGCAATCGCAGCAGCTTCCCACAAACCATCCTCAGAATACTCATAAGTCACCGACGAATACCAGACCTCCCTCCGCTTTTACAGATGGAGACGCCCCATCATGCTCCACTTCACCGTCTACTAATAACTGTCAGACGTCGCCTCCGAATCCCCTGAAAAGAAATCAACCAGACACATTTGGAGGGCCTTCGTTAGTCGAAACCACCAATAGTATGATGCACGAGCTTCAAAGTAAGCCCGACATGCAGAATAAACACGACTTACACGGCGTAAAAGGACCTGACAAGCAAAAGCACAAAGGGGCAATCAATGATCAGATGGAATCTTCTTCCGGAACATCGTACAATATTGATCCCGTTAACATCCACCAGAACTTTCCACTTTCCAACTTCTACATGGATGGTGGTGATGTCCATTCACAACAACCTAGAAGTAATTTACCATTTGCCCCAAACCTTGATGGATTAACACCCGATCCTTTGCTCTCAAGAGGTTATGATTCTCAAAAAGATCTTCAAAACTTGTTGTCTAATTACGGTGGTGCTCCACGGGACATTGAAACCGAGCTGTCAACTGCTGATATAAGTTCACAATCGTTTGGGGTGCCGAACATGTCCTTTAAGCCCGGATGCTCAAATGATATTGCCATCGCTGATACCGCGGTTTTGAACAATGGCTTATGGTCTAATCAGACTCAGCGAATGCGAACATATACCAAGGTTCAAAAATGTGGCTCGGTCGGAAGATGTATTGATGTCACCCGATACAAGGGATACGAAGAACTCCGAAATGATTTGGCTCGTATGTTCGGGATTGAAGGTCAGCTAGAAGATCCACTAAGAACGGACTGGAAACTTGTATACGTGGATCACGAAAACGACATTCTTCTTGTAGGCGACGACCCTTGGGAAGAATTTGTAAACTGTGTCCAAAGCATAAAGATACTATCATCTGTTGAAGTACAACAAATGAGCTTGGAAGGGGACTTAGGTTATGTTCCAATCACCAATCAAGCTTGTAGTGGCTCAGAAAGTGGCAATGCATGGAGAGCACAGTATGATGATAACTCGGCAGCATCGTTCAATCGATGA 3051 0.452 MLASDMGLKQNQQPSEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFSMQPPAQEIVAKDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFIRDEKQQLLLGIKRSSRQQPALSSSVISSDSMHIGILAAAAHAASNNSPFTIFYNPRTSPCEFVIPLAKYNKALYTHVSLGMRFRMMFETEDSGVRRYMGTITGISDLDPVRWKNSQWRNLQVGWDESTAGERPSRVSIWDIEPVVTPFYICPPPFFRPKFPKQPGMPEDESEIENAFKRAMPWLGDELGMKDASSSIFPGLSLVQWMSMQQNNNNNNQFSSPQSALLPPSMLSSNTLHGNGSLNTDDPSKILNFQSPAALSAPSLQFNKPNLPNQQPPTSWAQQQQQQQKMQSLLQTPLNQLQQQQQQQQQRQLQLAGAQNLPQSQQQQPQLNQHNAQPPQQQPQQQHQQPCQNATMNNGTVGSNQISNQCVQQQVNYSQLQQQLLSGSIPMQQNFQSVGKNGSIMTSLPQDSQFQQQQQIDPQQASLLQRQQQQTQLQQSSLQLLQQSMLQRAPQQSQASQILPQNISDQQSQMQLLQKLQQQQQQQQQQQLLSTSSPLLQSQLLQQQNTHQQLSQLPMSQHQPQQLGNNAFSMEKLLNNNYSSSPLMQSQQLPTNHPQNTHKSPTNTRPPSAFTDGDAPSCSTSPSTNNCQTSPPNPLKRNQPDTFGGPSLVETTNSMMHELQSKPDMQNKHDLHGVKGPDKQKHKGAINDQMESSSGTSYNIDPVNIHQNFPLSNFYMDGGDVHSQQPRSNLPFAPNLDGLTPDPLLSRGYDSQKDLQNLLSNYGGAPRDIETELSTADISSQSFGVPNMSFKPGCSNDIAIADTAVLNNGLWSNQTQRMRTYTKVQKCGSVGRCIDVTRYKGYEELRNDLARMFGIEGQLEDPLRTDWKLVYVDHENDILLVGDDPWEEFVNCVQSIKILSSVEVQQMSLEGDLGYVPITNQACSGSESGNAWRAQYDDNSAASFNR 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01960 1016 MobiDBLite consensus disorder prediction 318 356 - -
Vivi4g01960 1016 FunFam Auxin response factor 884 978 - -
Vivi4g01960 1016 Gene3D - 16 119 IPR015300 -
Vivi4g01960 1016 Coils Coil 573 596 - -
Vivi4g01960 1016 ProSiteProfiles B3 DNA-binding domain profile. 18 120 IPR003340 GO:0003677
Vivi4g01960 1016 MobiDBLite consensus disorder prediction 648 707 - -
Vivi4g01960 1016 Pfam Auxin response factor 144 226 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vivi4g01960 1016 SMART B3_2 18 120 IPR003340 GO:0003677
Vivi4g01960 1016 MobiDBLite consensus disorder prediction 506 533 - -
Vivi4g01960 1016 MobiDBLite consensus disorder prediction 735 768 - -
Vivi4g01960 1016 MobiDBLite consensus disorder prediction 368 398 - -
Vivi4g01960 1016 SUPERFAMILY DNA-binding pseudobarrel domain 8 147 IPR015300 -
Vivi4g01960 1016 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 3 978 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vivi4g01960 1016 SUPERFAMILY CAD & PB1 domains 902 967 - -
Vivi4g01960 1016 MobiDBLite consensus disorder prediction 648 719 - -
Vivi4g01960 1016 MobiDBLite consensus disorder prediction 419 466 - -
Vivi4g01960 1016 FunFam Auxin response factor 16 120 - -
Vivi4g01960 1016 ProSiteProfiles PB1 domain profile. 889 973 IPR000270 GO:0005515
Vivi4g01960 1016 Pfam B3 DNA binding domain 18 119 IPR003340 GO:0003677
Vivi4g01960 1016 Gene3D - 884 978 - -
Vivi4g01960 1016 MobiDBLite consensus disorder prediction 735 756 - -
Vivi4g01960 1016 Pfam AUX/IAA family 886 975 IPR033389 -
Vivi4g01960 1016 Gene3D - 181 252 - -
Vivi4g01960 1016 CDD B3_DNA 17 109 IPR003340 GO:0003677
Vivi4g01960 1016 FunFam Auxin response factor 181 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01960 Vivi-Chr4 92092362 92097164 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01960 1 396 B3 DNA Binding Superfamily AT1G19220 78.788 0.0 617
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vivi4g01960 AUX_IAA 8.8e-09 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01960 K14486 - gmx:100815277 1350.11