Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01957 ATGGGGACGAAGATGAAGTCCAAAACGCAAGTGGTGAAAAACAAAGACAACGATAAGAAAGCCGTTGGTAATGGAACCAACAAAGAAGCCAATAGTGTTTTTGCTTCTTGCACCTTCTCTAGCCTTGGTCTTCATCCTACGTTATGTGACCAGCTTCGCGAAAGGATGGGTTTTGAAGGTCCAACATTAGTCCAAGCTCAAGCCATTCCTGTTGTTCTATCTGGCCGTCACGCACTAGTTAATGCTGCTACTGGCACAGGGAAGACTATTGCATACCTTGCTCCAATAATTCATCATTTACAGAGTTACGATAAGCGAATTGAGCGCTCCGATGGAACATTTGCGTTGGTTCTTGTACCAACGCGTGAGTTATGTTTGCAGGTTCATGAAATTCTTCAGAAGTTATTGCACCGGTTTCATTGGATTGTTCCAGGATACATTATGGGGGGTGAAAGTAGGTCAAAGGAGAAAGCCAGGCTGCGCAAAGGTATATCAATTCTTATTGCAACTCCCGGCCGTCTTTTAGATCACTTGAAGAATACAACATCATTCTTGCATACAAATTTGCGCTGGATAATTTTTGATGAAGCTGATCGTATTTTGGAATTAGGATTTGGAAAAGAGATTCAAGAAATTCTGAATCTTTTAGGTTCAATGAAGACCGGGCATGAGGACCAAGAGAATACTGTTGCAAGACCCTCTAAATTTCAAAGACAGAACCTGCTTTTGTCCGCAACCTTAAATGAGAAAGTAAACCACCTTGCTAAAATTAGTTTAGAGGATCCAGTGATGATTGGTATTGATGATAAAACAATGGAGCCAACTTCAAAAATTAGATTTGCCCATTCCGACTCTGATGAAGACAATGAAGACAAGTTTTCCAATAAAATAGAAGCAGTTGGAGCTTATAAAGTGCCTGAACAGTTGATTCAGAGATATTTGAAGGTGCCCTGTGGATCACGGCTTGCTACACTTCTTTCAGTTCTAAAGCATCTTTTTGAAAGGGAACCTTCACAGAAGGTTGTGGTATTCTTTTCAACATGTGATGCCGTGGACTTTCACTATTCAGTTTTAACCGAATTCCTTTTCTCATCACATCCACAAACCGAAGAAGGGAACAGACCAATTTTCCTTGGATGCAAAACTCTTCGGCTACATGGTAATATGGAACAGGAGGACAGGACGACCAGTTTTCAGGCCTTTAAAACTGATAAATCTGCTCTTCTTTTATCTACCGATGTTTCTGCCAGAGGCCTAGATTTTCCAAATGTTAGATGCATCATACAATATGATTCCCCTGGAGAAGCTACTGAATATGTGCATAGAGTTGGAAGAACAGCTCGACTGGGCGAAAGAGGAGAGTCATTGTTATTTCTGCAACCTGCTGAAATAGACTATTTACAAGACTTGAAGAAACATGGTGTCTCATTAACAGAGTATCCTCTCGTCAAAGTGTTGGACAGTTTCCCACTGTCTGGACACAAAAACATGAAGAATTCTGTTTTCATAGACATGCATCCCTGGATCATGTGTCTCCAGAAGGCACTCGAGTCCTTCCTCTCGTCCAAGCCCCATATGGATGAACTTGCCAAGAAGGCATTTTGCTCTTGGGTCCGTGCATACACAGCACATCGCGGGGACCTGAAAAGAATATTTATGGTTAAGAAACTTCACTTGGGGCATGTAGCAAAAAGCTTTGCGTTGAAACAAATCCCCTCTTTAGTTGGAAAATCATTCCAAAACCAAGCTAAGAAGAGAAAAAGATTTGAGAAGAAAAATGGGCCGTCAAATAAGAGAAAAGTTGCACGACGGGTGAAGTAA 1821 0.4135 MGTKMKSKTQVVKNKDNDKKAVGNGTNKEANSVFASCTFSSLGLHPTLCDQLRERMGFEGPTLVQAQAIPVVLSGRHALVNAATGTGKTIAYLAPIIHHLQSYDKRIERSDGTFALVLVPTRELCLQVHEILQKLLHRFHWIVPGYIMGGESRSKEKARLRKGISILIATPGRLLDHLKNTTSFLHTNLRWIIFDEADRILELGFGKEIQEILNLLGSMKTGHEDQENTVARPSKFQRQNLLLSATLNEKVNHLAKISLEDPVMIGIDDKTMEPTSKIRFAHSDSDEDNEDKFSNKIEAVGAYKVPEQLIQRYLKVPCGSRLATLLSVLKHLFEREPSQKVVVFFSTCDAVDFHYSVLTEFLFSSHPQTEEGNRPIFLGCKTLRLHGNMEQEDRTTSFQAFKTDKSALLLSTDVSARGLDFPNVRCIIQYDSPGEATEYVHRVGRTARLGERGESLLFLQPAEIDYLQDLKKHGVSLTEYPLVKVLDSFPLSGHKNMKNSVFIDMHPWIMCLQKALESFLSSKPHMDELAKKAFCSWVRAYTAHRGDLKRIFMVKKLHLGHVAKSFALKQIPSLVGKSFQNQAKKRKRFEKKNGPSNKRKVARRVK 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01957 606 Pfam DEAD/DEAH box helicase 63 253 IPR011545 GO:0003676|GO:0005524
Vivi4g01957 606 SMART helicmild6 352 450 IPR001650 -
Vivi4g01957 606 MobiDBLite consensus disorder prediction 9 23 - -
Vivi4g01957 606 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 193 201 IPR000629 -
Vivi4g01957 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 69 265 IPR014001 -
Vivi4g01957 606 CDD DEADc_DDX31 48 266 - -
Vivi4g01957 606 SMART ultradead3 57 279 IPR014001 -
Vivi4g01957 606 Pfam Domain of unknown function (DUF4217) 513 573 IPR025313 -
Vivi4g01957 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 112 471 IPR027417 -
Vivi4g01957 606 PANTHER RNA HELICASE 25 577 - -
Vivi4g01957 606 FunFam RNA helicase 2 267 - -
Vivi4g01957 606 Gene3D - 319 594 IPR027417 -
Vivi4g01957 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 324 497 IPR001650 -
Vivi4g01957 606 Gene3D - 2 268 IPR027417 -
Vivi4g01957 606 SMART DUF4217_3 511 576 IPR025313 -
Vivi4g01957 606 MobiDBLite consensus disorder prediction 582 606 - -
Vivi4g01957 606 CDD SF2_C_DEAD 309 459 - -
Vivi4g01957 606 MobiDBLite consensus disorder prediction 1 25 - -
Vivi4g01957 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 37 66 IPR014014 GO:0003724
Vivi4g01957 606 Pfam Helicase conserved C-terminal domain 328 450 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01957 Vivi-Chr4 91865040 91872290 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01957 38 482 Eukaryotic Initiation Factors Gene Family AT3G19760 25.835 6.61e-35 134
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01957 K14806 - gmx:100805157 953.355