Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01944 ATGAGCCGAAAATTTAGCTCCCTTAAGGAGCTTAACGATTCAAAGGAAACATGGAGATTGGTCGTTCGAGTTGTTGATATATGGAGTGTTATCAACAGCAAGGGTAAGGAGCATCTGGAGATGGTTATAATGGACGCATCGGGTGATAGGATACAAGTTTTGATTCGTTTTGACGATACACCGAAATGGAAAGAACGAATACGTGAAAACATGTCTTGCATAATCAACAATGGAACTATTTATGATAACGATTTCCAGTGGAAGCTTTGTGATCATGACAAGAAGTTTGTGTTTATTGGTGGTACGATTGTGAAGGAAGTTGATATTCAGAACCTTCCTCCCAAAAGATTTTATTTCAAAGACTTTTCTGATATACTTGCAGGCAACTGTGAACTGAACCGACTTGAAGATATTATTGGTGTAGTTCAAGAAATCAACAATTTTCAATATAACAATTCTGGAAAAAAGTCATTTGTTTCACTAAGTCTTAAAGACGTGAAAGGTGTCATTGTTAACTGCACGTTATGGGAGAGCTACGGAACAAAATTTTTGGATTTCTACCATGATGAAAAAAACAGTGGTGCTATTGTAATTGTACTAACTCATGCAATGATAAAGGAATCACAAGTCTCAAATGGATGGAGTGGATCTAAATTGCTAATTAACGAAGACATTCCAGAGATAACTGAGTATTTATCAAAGTTACCTGCAAATGAGCAGACTGGAAAGCCTTCGCAGTCCTCAAAGGGTATGTCTCTTTGGTCTGGTGCCTCTCAATTCACCCCAGTTGAAAGTTTCGTCCATAAGGCCAAATGTATATCTCTGAGTGACCTCTGCAAGGTGAAACAGGACATGTTATGTGTTACTGTTGGAACAACTCAAAAGATTTTTGTCTCAAAACATGGTTGGTTTTATTATGGATGTACTAAATGTTCTTTGAAGGCATCTGATGTGAACAATCCATACAAATGTTCATGTGGACAGAATATAGAACATGCCATACCAAGGTATCGAGTTGACATATATGTAATTGATGGTGAATCAAAATTTCGCTTTGTGTTTTGGGATACTGACTGTGCCGACATTATTGGAAAGTCCGCTGATAGTATTTATAAAGCAATGCTTGAGGAGTCGTTGTCTGCATACGGAGAAAATGATCCTGATAAAGTTGTGACCAATACTCCATCTAAAGGAATTCCCATTACTCTTGATGCTGAAGATTCTGAATGTCAACCTTATGGAGCTACTCAACTTTCAGGAACAAAACCTTCAAAGAAAGTGAAGATTGAATCAAATGCCTGA 1302 0.374 MSRKFSSLKELNDSKETWRLVVRVVDIWSVINSKGKEHLEMVIMDASGDRIQVLIRFDDTPKWKERIRENMSCIINNGTIYDNDFQWKLCDHDKKFVFIGGTIVKEVDIQNLPPKRFYFKDFSDILAGNCELNRLEDIIGVVQEINNFQYNNSGKKSFVSLSLKDVKGVIVNCTLWESYGTKFLDFYHDEKNSGAIVIVLTHAMIKESQVSNGWSGSKLLINEDIPEITEYLSKLPANEQTGKPSQSSKGMSLWSGASQFTPVESFVHKAKCISLSDLCKVKQDMLCVTVGTTQKIFVSKHGWFYYGCTKCSLKASDVNNPYKCSCGQNIEHAIPRYRVDIYVIDGESKFRFVFWDTDCADIIGKSADSIYKAMLEESLSAYGENDPDKVVTNTPSKGIPITLDAEDSECQPYGATQLSGTKPSKKVKIESNA 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01944 433 Gene3D - 5 108 IPR012340 -
Vivi4g01944 433 PANTHER OS03G0429900 PROTEIN 6 385 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi4g01944 433 Pfam Domain of unknown function DUF223 40 127 IPR003871 -
Vivi4g01944 433 Gene3D - 110 244 IPR012340 -
Vivi4g01944 433 SUPERFAMILY Nucleic acid-binding proteins 4 107 IPR012340 -
Vivi4g01944 433 SUPERFAMILY Nucleic acid-binding proteins 118 239 IPR012340 -
Vivi4g01944 433 Gene3D - 265 414 IPR012340 -
Vivi4g01944 433 MobiDBLite consensus disorder prediction 412 433 - -
Vivi4g01944 433 SUPERFAMILY Nucleic acid-binding proteins 278 374 IPR012340 -
Vivi4g01944 433 CDD RPA1_DBD_B_like 137 231 - -
Vivi4g01944 433 CDD RPA1_DBD_A_like 19 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01944 Vivi-Chr4 91051651 91054035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01944 1 377 Core DNA Replication Machinery Family AT5G08020 21.642 2.76e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01944 - - vvo:131604714 673.315