Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01927 ATGGAGTGCAATCGAGTGAAGGGAAGAAGGTTTCGCAACTACGCTTCACAGTGGGATTCTTTCCCTTTCAGTAGGGCGCAAGTGGAGTCTTCGGAGGTGATTTCATCTATTTTCTTTTCTGAGTTTCTAGAGAGGATAAGAGCGGCAGATATCTTCAAACTGTTTGGGTGCATCGGCGATGTGGTGGAGGTGGTGATTCTGCCTCGGAGAAACAAGATGGGGAAAAGGTATGGTTTTGCTAGGTTCAGAGGTGTTAAAGATTCTAGGTTATTGGCGGTCAAATTGGATAGCTTTTTTATCGATGGGAGAAAGATTCATGCTAATATTTCTAGGATTGATAGAGGATTAGGGGATGCATTTTGGCGGAGATTAGGTTATAATGAGGGGGCTGCGGTGCTGAGAAGGGGAGATTCTATGGATGGGATGAGTTCTTTTGTGGGAGTAAAATATTTCGCAAACATTGTATCGGAAGGGAAGAAAAAGGTTGTTCATGATGCTCACTCGTCCTTTGCTTTCAGCTTTAAACCTAAACATTCTAACCAATGGAAGAAGGCCTTTGTCGGTGAAGTGCTTTTTTCGAGTGAGTCTTTTAATATTCAAACTCATCTAGAAGTTAAAGGGATCTCTGTTGTCAAAGTTTGTCCGATTGGTGCGAACCTTTTTTTGTTAGAGGAAACAGCGGAAGGTATGATTCTATATTTGATTAGTGAGGGGAGTTCTAGGTGGAAACAATGGTTCCGATCTATTAGACCTTGGAGGACGAGTGATGTAGATTCAGTCAGGTTGGCATGGATTCATGTTCACGGCATTCCTTGCCATGCTTGGTGTTTCGAATTTTTTGGGAAGATCGCTAACTACATTGGCACATTTGTTTCGGTTGATGAGAACACGATGAAAGGTAGTAATAGGGACATCACTAGGTTTATGGTGAGAGTCCCTGTGAATTTTGTTTTGAAAGAACGGATTATCATTGATATTGATGGTGTTGAGTTTGATTTAGTTATGCGCGAGGATTTGTACGGTGCGATGAAGTATGTCAAAAGGCTGGGAAGTGATAAGGGTTAG 1065 0.4207 MECNRVKGRRFRNYASQWDSFPFSRAQVESSEVISSIFFSEFLERIRAADIFKLFGCIGDVVEVVILPRRNKMGKRYGFARFRGVKDSRLLAVKLDSFFIDGRKIHANISRIDRGLGDAFWRRLGYNEGAAVLRRGDSMDGMSSFVGVKYFANIVSEGKKKVVHDAHSSFAFSFKPKHSNQWKKAFVGEVLFSSESFNIQTHLEVKGISVVKVCPIGANLFLLEETAEGMILYLISEGSSRWKQWFRSIRPWRTSDVDSVRLAWIHVHGIPCHAWCFEFFGKIANYIGTFVSVDENTMKGSNRDITRFMVRVPVNFVLKERIIIDIDGVEFDLVMREDLYGAMKYVKRLGSDKG 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01927 354 CDD RRM_SF 37 108 - -
Vivi4g01927 354 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 35 112 IPR000504 GO:0003723
Vivi4g01927 354 PANTHER DUF4283 DOMAIN PROTEIN 186 330 - -
Vivi4g01927 354 SUPERFAMILY RNA-binding domain, RBD 35 115 IPR035979 GO:0003676
Vivi4g01927 354 SMART rrm1_1 36 108 IPR000504 GO:0003723
Vivi4g01927 354 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 106 IPR000504 GO:0003723
Vivi4g01927 354 Gene3D - 24 117 IPR012677 -
Vivi4g01927 354 Pfam Domain of unknown function (DUF4283) 180 308 IPR025558 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01927 Vivi-Chr4 90133971 90135035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01927 3 106 Eukaryotic Initiation Factors Gene Family AT1G34140 25.000 5.84e-06 45.8