Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01910 ATGGCTTCCTCATCTCACAAACTATTCCTCCTTCTCTTCACAATCCTCTTCTCACTAACTATCCCTCTCCCCACAAACACTTCCACAACCACAACCTTAAATCTCAAACTCACTTCCTTAAAATCTCTCTGCAAAACAACACCATACCCAAAACTTTGTTTCAACTCCCTAAAACTCTCCATATCAATAACCATAAACCCAAACATCATAACCTACCTCCTCCAATCCCTTCAACTAGCAATATCAGAAACCACAAAGCTCTCCAATCTCTTCCACAACATCGAAAACTCAAACATCCTAGAAACCCAAAGAGGATCAATTCAAGACTGCAAAGAGCTTCACCAATCAACCTTAACTTCATTGAAAACATCATTAACCCGAATACGTTCCTCAAACAAAAGAAACATAGCTGACGCTAGAATCTACCTCAGTGCAGCACTCACAAACAAAAACACATGCTTAGAAGGACTTGATTCTGCTTCTGGCAACCTTAAACCAGTTCTTGTGAACTCTGTCATCAACACATACAAACACGTGAGTAACACTCTTTCCATGCTCTCAAATCATGTAAACGAGGCTTCAAATCAAAAGGGTCACAACAAAAAAATGGTGTCTCCGAAATGGCTAGATTTGGATGAATATGATCCAAATGAAGCTATTGTTGTGGCTGCAGATGGAAGTGGGAACTTTAGCAGTATCAATGATGCTATAAACTTTGCACCAAATAACAGCATGGTTAGGATAGTGATTTATGTTAAGGAAGGGATTTACGATGAAAACGTTGAGATACCGAGTTATAAAACTAACATTATCATGCTTGGTGATGGAAGTGATTCTACTGTCATCACTGGTAACAGAAGTGTTGTTGATGGATGGACCACTTTCAGATCTGCAACTTTAGCTGTATCCGGCGATGGTTTTCTTGCAAGAGACATAGCATTTGAGAACAAAGCAGGACCAGAGAAACATCAAGCAGTTGCATTAAGAGTAAATGCAGACTTTACAGCCTTCTACAAATGCGCAATCTATGGTTACCAAGACACACTTTATGTCCATTCATTTCGACAATTTTATCGAGAATGTGACATATACGGTACCATAGATTTCATATTCGGTAACGCAGCGGTAGTCTTACAAGAATGCAACATCATTTCAAGAATGCCATTACCAAATCAATTCACTGTCATAACAGCACAGTCAAGAGATAACCCCGACGAAGACACTGGAATTTCGATACAGAACTGTTCGATTCTAGCTACGGACGAACTCTATGCGAACTCTAGTAGAATCAAGAGTTACCTTGGAAGGCCATGGAGGGTTTATTCTAGAACTGTTTTGATTGAGTCTTATATCGATGATTTTATTGATGAAAAAGGTTGGACTAAATGGTCAAATGATCAAGGTTTGGATAGTTTGTTTTATGGTGAGTATGAGAATTATGGACCGGGTTCGAAGATTGATAATCGGGTTGAATGGTTGGGTTACCATTTGATGGATTATAGTGATGCTTATAATTTTACTGTTTCTGAGTTTATTACTGGTGATGAATGGCTTCAGTCAACTTCAGTTCCTTATGATGATGGAATTTGA 1590 0.3874 MASSSHKLFLLLFTILFSLTIPLPTNTSTTTTLNLKLTSLKSLCKTTPYPKLCFNSLKLSISITINPNIITYLLQSLQLAISETTKLSNLFHNIENSNILETQRGSIQDCKELHQSTLTSLKTSLTRIRSSNKRNIADARIYLSAALTNKNTCLEGLDSASGNLKPVLVNSVINTYKHVSNTLSMLSNHVNEASNQKGHNKKMVSPKWLDLDEYDPNEAIVVAADGSGNFSSINDAINFAPNNSMVRIVIYVKEGIYDENVEIPSYKTNIIMLGDGSDSTVITGNRSVVDGWTTFRSATLAVSGDGFLARDIAFENKAGPEKHQAVALRVNADFTAFYKCAIYGYQDTLYVHSFRQFYRECDIYGTIDFIFGNAAVVLQECNIISRMPLPNQFTVITAQSRDNPDEDTGISIQNCSILATDELYANSSRIKSYLGRPWRVYSRTVLIESYIDDFIDEKGWTKWSNDQGLDSLFYGEYENYGPGSKIDNRVEWLGYHLMDYSDAYNFTVSEFITGDEWLQSTSVPYDDGI 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01910 529 SMART PMEI_2 35 185 IPR006501 GO:0004857
Vivi4g01910 529 Gene3D - 215 529 IPR012334 -
Vivi4g01910 529 FunFam Pectinesterase 213 529 - -
Vivi4g01910 529 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 188 IPR035513 -
Vivi4g01910 529 Pfam Pectinesterase 220 515 IPR000070 GO:0030599|GO:0042545
Vivi4g01910 529 ProSitePatterns Pectinesterase signature 1. 244 263 IPR018040 -
Vivi4g01910 529 FunFam Pectinesterase 36 188 - -
Vivi4g01910 529 Gene3D Invertase/pectin methylesterase inhibitor family protein 36 189 IPR035513 -
Vivi4g01910 529 ProSitePatterns Pectinesterase signature 2. 363 372 IPR033131 -
Vivi4g01910 529 PANTHER PECTINESTERASE 20 519 - -
Vivi4g01910 529 SUPERFAMILY Pectin lyase-like 217 526 IPR011050 -
Vivi4g01910 529 CDD PMEI-like_3 42 188 - -
Vivi4g01910 529 Pfam Plant invertase/pectin methylesterase inhibitor 40 185 IPR006501 GO:0004857
Vivi4g01910 529 NCBIfam pectinesterase inhibitor domain 12 189 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01910 Vivi-Chr4 88328437 88331139 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01910 32 529 Carbohydrate Esterase AT2G26440 63.391 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01910 - - psat:127136348 943.34