Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01906 ATGGCGTTCCAAGATTTCGACCTTGTGTCTGAAAGGCGGAAAACCAATGCCAAATCACACCTTAGAAAAAAAATTATGGTCGGTGTTACTTCCGCCCTTCTCATAGCATGTGTTGTAGCAGCTGCAGCTTTTGTTATCGTGAGACATTCAGGATCTGACAATAATATGAAGCAAGTTCCGACCGCAGATTCAGAAACCGCGCATATTGATAAATACTCTAGGCTTGTGAAAATGTTATGTAGCAATTCGGGTTACAAGGAAAAATGTGAAAGCACACTTACTGAGGCATTGAAAAAAGATCCTAAGTTGACAGAACCAAAGGATCTTCTAATGATTTCTATGGTACTCGCCGAGAATGAAATTAACAGGGCATTTAACGAAACTGCGAACTTGAAATTCGCTAACGAGGAAGAAAAGGGAGCTTATGAAGATTGTAAACTAGTGTTTGCTGATTCTAAAGAAGATATGGGATTCTCAATGAATGAAGTTGGTCAAGTTGATGTGTCCAAATTAGCTGAAAAAGAAGCTGAATTGAACAACTGGCTTAGTTCTGTTATATCTAACCAACAAACTTGCATTGATGGTTTCCCCGAAGGAGAGTTTAAGGAAAAATTGAAGAAGATATTTACTGAATCAAGGCAACTTTTGAGCAATACACTTGCTATTATTTCACAAATTTCAAAAATTGTTAATGTATTCCAAGGTGGACTTTCTGGATTCAAGTTTCCTTGGGGTAAATCTGCTGCACCAACTCCCGCTCCCCTTGTTGCTCGTGGTGCTGCTGCTCCTGCTGGTTCGCCTGGTGCTGCACCTTTTGGTGCTCCCGTGGATTATCCAATTTTTGAAGCTCCTGCTGGTGCTCCTGGCGCTGCTCCCATTGATGCTGCCACTCCTCCTGCTTGGGCTGCACCGGTTCTTGAGTATGTTGGAACAACTGAGAAACCTACTCCTAATGTCACCGTTGCGCAAGATGGTAGTGGAGACTTCAAAACCATCTCCGAAGCTTTGGCCGCTATTCCATTACCCTATGAAGGAAGGTATGTTGTTTATGTTAAGGAAGGAGTGTATGATGAGTTGGTTACAGTTACAAAGAAAATGGCGAACCTTACCATGTATGGTGATGGAGGTTTAAAGAGTATCATCACTGGAAATAAAAATTACGTCGATGGAGTTAGAACTTTCCAAACTGCATCGTTCGTTGCACTTGGAGAAGGATTTGTTGGAAGAGACATGGGATTCAGAAACACGGCCGGTGCAATAAAGCATCAAGCCGTGGCCGCCAGAGTCCAAGCAGATCAAGCTGTATTCGTCAACTGCAACTTCGAGGGTTACCAAGACACGTTATACGCGCAAACTCACAGACAATTCTACCGCGACTGTGTCATTTCAGGCACAATCGATTTCATCTTCGGAGACGCTTCAGCAGTGTTCCAAAACTGCGAAATGGTCATTAGAAAGCCATTGGAGAACCAACAAAACATTGTGACAGCGCAAGGAAGAATCGAGAAAACAGAAAATACCGGATTTGTTCTACAAAAATGTGTGATCAAGGGAGAAGATGGCCTTCCTCCAACAACCAAGAACTACATTGGAAGACCATGGAAAGAATATTCAAGAACAATTATCATGGAATCTGACATAGGTGGATTGATTCATCCTGATGGTTGGTTACATTGGGAAGGTGATTTTGCACTAAAAACCTTGTACTATGGTGAGTATAACAATGTTGGTGCTGGTGCTAACACTAATGCTAGAATTAAGTGGATTGGACGCAAAGATATTAATAGGGAAGAGGCTATGACTTATACTGTGGAAACTTTCTTGCAAGGAACATGGATCAATGGTACTGGTGTTCCAGCTAATTTGGGATTGTACAATTGA 1881 0.4195 MAFQDFDLVSERRKTNAKSHLRKKIMVGVTSALLIACVVAAAAFVIVRHSGSDNNMKQVPTADSETAHIDKYSRLVKMLCSNSGYKEKCESTLTEALKKDPKLTEPKDLLMISMVLAENEINRAFNETANLKFANEEEKGAYEDCKLVFADSKEDMGFSMNEVGQVDVSKLAEKEAELNNWLSSVISNQQTCIDGFPEGEFKEKLKKIFTESRQLLSNTLAIISQISKIVNVFQGGLSGFKFPWGKSAAPTPAPLVARGAAAPAGSPGAAPFGAPVDYPIFEAPAGAPGAAPIDAATPPAWAAPVLEYVGTTEKPTPNVTVAQDGSGDFKTISEALAAIPLPYEGRYVVYVKEGVYDELVTVTKKMANLTMYGDGGLKSIITGNKNYVDGVRTFQTASFVALGEGFVGRDMGFRNTAGAIKHQAVAARVQADQAVFVNCNFEGYQDTLYAQTHRQFYRDCVISGTIDFIFGDASAVFQNCEMVIRKPLENQQNIVTAQGRIEKTENTGFVLQKCVIKGEDGLPPTTKNYIGRPWKEYSRTIIMESDIGGLIHPDGWLHWEGDFALKTLYYGEYNNVGAGANTNARIKWIGRKDINREEAMTYTVETFLQGTWINGTGVPANLGLYN 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01906 626 PANTHER PECTINESTERASE 38 614 - -
Vivi4g01906 626 Gene3D Invertase/pectin methylesterase inhibitor family protein 72 227 IPR035513 -
Vivi4g01906 626 SUPERFAMILY Pectin lyase-like 315 619 IPR011050 -
Vivi4g01906 626 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 74 227 IPR035513 -
Vivi4g01906 626 ProSitePatterns Pectinesterase signature 2. 462 471 IPR033131 -
Vivi4g01906 626 SMART PMEI_2 71 222 IPR006501 GO:0004857
Vivi4g01906 626 Pfam Pectinesterase 318 610 IPR000070 GO:0030599|GO:0042545
Vivi4g01906 626 Gene3D - 312 624 IPR012334 -
Vivi4g01906 626 Pfam Plant invertase/pectin methylesterase inhibitor 75 222 IPR006501 GO:0004857
Vivi4g01906 626 FunFam Pectinesterase 312 624 - -
Vivi4g01906 626 NCBIfam pectinesterase inhibitor domain 70 226 IPR006501 GO:0004857
Vivi4g01906 626 CDD PMEI-like_3 79 228 - -
Vivi4g01906 626 FunFam Pectinesterase 72 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01906 Vivi-Chr4 87955830 87958358 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01906 1 626 Carbohydrate Esterase AT4G33230 41.654 1.13e-169 495