Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01898 ATGGATACTCCACCAACACCAAACCACACTTCCTCACATGATAACCTTCCCATTACCGTAACCGTTTTCGCCGTTACCGTTATCGTTTTCTTAACGATCTATTTCATCTTCCGTTACCGCCGCAATAGCGCCTCCCGTCGTTTAACTCCGCCGTCGTCGTCTTCCACAGTTTTATCATCCGGCAATAGAATAACGCCGGAGACGACTTCGTCTTCGTCCTCCGTAGTCGATTCTCTCCCGCTTTTCACGTTCTCTTCCATCAAACGCCGTTCCTCCTCCGTTGTCTCCGGCGACTGCGCTGTTTGTTTGTCGAGGTTTGAGCAAAATGATTACCTCCGTCTTCTCCCTCTCTGTTGCCACGCATTCCACGCGGAATGCGTTGACGTCTGGCTCCAGTCGAATCTGACGTGTCCGCTTTGTCGATCAGCCGTTATCGCTTCGGAATCGGAGGTTGTGAAGATTTCCCGGCCGGCATCGTCTTCATCTGATAACAGCTTCCGTTTGGAGTTAGGTAATGTCAGCAATCGCCGTGGCGCCACCGCATCTGAGAATGTCAGCGGCGAAACTGACCGGAGATCATACTCCGTCGGCGCATTCGAGTATTTCGTGGATGAAGAAGCTGAGATTCCATTCGGTCATACTAATCGAAGAATTGTTCCCGGTGAGAAAGATGATGCACCGGCAATCCCGGCGGGGGAGTTTCCGGTTCCGGTGGCTTCTCACTTGGTCGGTGAAGGTAACAACTGGCTGAAGGATTACATGGATAATATCTCAAGTCTGACGTGGTTTAGAAATTCTGGAAGGTTCTTCAATGGGAGTAGTCGACGAAACGACGTCGTTGGAGTTCAGGATTTTGATGTTGAAGCTAACAGGTTTGGGGAAGAAATTAGTGAGATGTTTAGATGGGTTTCAGGGGTTTGA 921 0.5005 MDTPPTPNHTSSHDNLPITVTVFAVTVIVFLTIYFIFRYRRNSASRRLTPPSSSSTVLSSGNRITPETTSSSSSVVDSLPLFTFSSIKRRSSSVVSGDCAVCLSRFEQNDYLRLLPLCCHAFHAECVDVWLQSNLTCPLCRSAVIASESEVVKISRPASSSSDNSFRLELGNVSNRRGATASENVSGETDRRSYSVGAFEYFVDEEAEIPFGHTNRRIVPGEKDDAPAIPAGEFPVPVASHLVGEGNNWLKDYMDNISSLTWFRNSGRFFNGSSRRNDVVGVQDFDVEANRFGEEISEMFRWVSGV 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01898 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 19 209 - -
Vivi4g01898 306 MobiDBLite consensus disorder prediction 45 71 - -
Vivi4g01898 306 CDD RING-H2_EL5-like 98 141 - -
Vivi4g01898 306 Pfam Ring finger domain 98 141 IPR001841 -
Vivi4g01898 306 FunFam E3 ubiquitin-protein ligase ATL6 62 147 - -
Vivi4g01898 306 SUPERFAMILY RING/U-box 75 146 - -
Vivi4g01898 306 SMART ring_2 99 140 IPR001841 -
Vivi4g01898 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 60 146 IPR013083 -
Vivi4g01898 306 ProSiteProfiles Zinc finger RING-type profile. 99 141 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01898 Vivi-Chr4 87773594 87775007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01898 1 141 C3H Transcription Factor Family AT2G34990 34.752 2.24e-22 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01898 K10663 - gmx:100804962 301.597