Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01896 ATGGCTAGACCCTTCGAGTTGGTGAAGAACATTAACGATGCGAAGGAGCTTTGGAAAGTTGTTGTTCTTATACATCACAAATGGACCGTTCTCAATAAGAACAAGGAACATTTCGAGTTGGTTGTCGTTGATAAAGATGGTTGTGACATCCATGTCAACGTTCCACATCCTTTTAAGCAGGCTTATGATTCACTTTTAACCGTTGGCAACACTTATACAATCTCAAACTTCCAAGTCTCTCTTAATGATATGCTTTTCAAGCCTTCAGATCACAAATTTATGTTGACATTTACTGGTGGTACATCTGTTACCGACAAGAATAAACATCAAATTCCTGCAAAGCCACTTAAATTCACTTCTTTCACTGATATTATGTCTGGGAATTGGAAAAAGGATGTTCTAATGGATGTCATTGGAATGGTCAAAGAAATTGGCTACACCCAACTACAACAGGGGGGCAAGAAACAACAGATCAATCTATCGTTGAAGGATTTGTCGGGCAACGTTTTGAATTGCACTTTGTGGGAAGGATATGCAGTGCAGTTCCATGAATTCAGTAAAAATAGAAAGGACATAACTCCCCTCATTATTGTTTTGCAATATGCAAAAGTCAAGGAAGAAGGTAAGTATCCATTATGTGTTTCTAACACCTTCAACGTTACAAAGTTGATTCTCAATGATGACTTTCCTCAGATTAAAGAATTTATTGAAAGCCTACCAAAAATCAGTGAGGCTGAATCTTCAAGTCAGGCTTTGAGCCTGCAGTCCCAGACACTGTCTCAATACTCAACTTCTTCTCAACACACTCCTTATGATAAACTAATGTATAAAGCAACCGTACAGCCTTTGGTTGAAATTGTAAAACTCAAGGAGGAAGCTCAATATGTTACCGTTGCGACAATAACCAAACTCAAGGCTGCTCAAGGTGGATGGTATTACCAAGCATGTCATCAGTGTCCTAGGGTTGCTAAAGGGAATGAACCACCCTATGAATGTACTCTTCGCCACAAAACAGAAACAGCCATTTATAGGTATAAAATTTTAATTGAAGTTTTTAATGCTGGAACAAAAGCATCATTTGTAATATGGGACCGTGAAGCTTTTCAACTTTTGAAGGTCACTGCTGCTCAGATGCGCACTAATTTACTTGAGGCTGGTATTACCGACCCTCTTGAGTTCCCAGTAGCGCTTGATGCTTTAGTTGGAATGACCATGGTTTTCAAGGTCAAATGGCAACCTGATTGGGAAAATGCGTCTGTTATGTCTATATTTGAAGATGACATTGTAAAAAAGGATATACTACGTTCATTTGGACAGGAATTGCCTAATTCCCAGAACATGCTAACTCCTAATGTAACACAGAACAATGAGAGTGTTGCTGAGGTTTCACATTTGGATGATTGGGACATCATTCCGGAAACCGATATTACATCTGATGCATTGCCGGACCCTGTTACACCAACTTCAGCTGCTAAACGGATTGCTCCACATGAATCACATGACATTACTCCTTTATCTCAGACGTCTGAATTACAACAGTCTTCCACAAAGATGAAAAAGCATATCAAACTGGAGAATTAG 1581 0.3915 MARPFELVKNINDAKELWKVVVLIHHKWTVLNKNKEHFELVVVDKDGCDIHVNVPHPFKQAYDSLLTVGNTYTISNFQVSLNDMLFKPSDHKFMLTFTGGTSVTDKNKHQIPAKPLKFTSFTDIMSGNWKKDVLMDVIGMVKEIGYTQLQQGGKKQQINLSLKDLSGNVLNCTLWEGYAVQFHEFSKNRKDITPLIIVLQYAKVKEEGKYPLCVSNTFNVTKLILNDDFPQIKEFIESLPKISEAESSSQALSLQSQTLSQYSTSSQHTPYDKLMYKATVQPLVEIVKLKEEAQYVTVATITKLKAAQGGWYYQACHQCPRVAKGNEPPYECTLRHKTETAIYRYKILIEVFNAGTKASFVIWDREAFQLLKVTAAQMRTNLLEAGITDPLEFPVALDALVGMTMVFKVKWQPDWENASVMSIFEDDIVKKDILRSFGQELPNSQNMLTPNVTQNNESVAEVSHLDDWDIIPETDITSDALPDPVTPTSAAKRIAPHESHDITPLSQTSELQQSSTKMKKHIKLEN 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01896 526 Gene3D - 260 433 IPR012340 -
Vivi4g01896 526 PANTHER OS03G0429900 PROTEIN 7 441 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi4g01896 526 MobiDBLite consensus disorder prediction 476 526 - -
Vivi4g01896 526 SUPERFAMILY Nucleic acid-binding proteins 116 240 IPR012340 -
Vivi4g01896 526 Gene3D - 6 107 IPR012340 -
Vivi4g01896 526 Pfam Domain of unknown function DUF223 39 134 IPR003871 -
Vivi4g01896 526 SUPERFAMILY Nucleic acid-binding proteins 290 429 IPR012340 -
Vivi4g01896 526 SUPERFAMILY Nucleic acid-binding proteins 4 104 IPR012340 -
Vivi4g01896 526 CDD RPA1_DBD_B_like 136 240 - -
Vivi4g01896 526 MobiDBLite consensus disorder prediction 501 515 - -
Vivi4g01896 526 CDD RPA1_DBD_A_like 19 103 - -
Vivi4g01896 526 Gene3D - 110 249 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01896 Vivi-Chr4 87582294 87585289 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01896 8 235 Core DNA Replication Machinery Family AT5G45400 23.868 6.24e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01896 - - vvo:131649648 945.266