Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01888 ATGGCTTCGGAAGCTACTCCAAGGAGAAGAAGGAATCGAGTTCAACCTTCAACACCGGAGGTAATCGACCTCGACTCTTTCCGCTCATACAACAAGCGAACCATCTCTGCTGCAACCATCTCTTCCGTCATCAACCTTTCTGACGAAGAAGACGACGACATTAAGGTCCTCGATTTCATTCCTAAGAACACTTTTTTAAGGAAACGCAAAAGAATTTTCGAAAAAGGAGAGTCTTCAAATTCAAGTAACATTCCGTTCGTCTGCGAAATCTGCACGGACACTAAAACAATGAAGGAAGCTTTCTACATCAGCGGCTGCTCTCACGCGTATTGCTCTGACTGCGTCGCAAATTACATCGGTTCCAAGCTTGAAGATAACATCGTCAACATCTCATGTCCAGTTCCCGAATGCAAAGGTTCATTGGAAGCGCAGATTTGCCGGACTATTCTTCCGGCTGAGGTTTTTGAAAAGTGGAGTAAAGGTTTGTGCGAGGCTTTGATCAATGCTTCGCAGAAATTCTACTGTCCCTTTGCAAACTGCTCTGCTCTTTTGATCAATGACGAAACCGAGGCGGTTACAAATTCAGAATGCCCTAATTGTAATAGGATGTTCTGTGCACAATGTAAGGTTCCGTGGCATGATGGAATCAAATGCAGCGAGTTCCAGAAGCTGAAAGCGGGCGAGAGGGAGAAAGAAGATATTATGTTGGTGCGCCTCGCACAGAATAAGCACTGGAGGCGATGCCCTAATTGCAAAATTTATGTTGCCAGAACAATGGGCTGCAACATCATGAGATGCAGGTGTCAGTGTAGTTTTTGTTACAAGTGTGGAGGAACCTACACTCGCACTGCTCCTGGCAGGTGCACTTGTAATGGAACTCCCCAACAACCTACACCGGTTTTTCACGGAACAACTGTCTCTAATAGTTATCTCAACTATTCGGGTCAACAACAACAAACTCCTTATGGTGTTTACACAGGAAAATATGGGACTGGTGGAACTTATTCTTATGGGGGCTCCTTCTATCCGGGTCGACGACGATAG 1044 0.454 MASEATPRRRRNRVQPSTPEVIDLDSFRSYNKRTISAATISSVINLSDEEDDDIKVLDFIPKNTFLRKRKRIFEKGESSNSSNIPFVCEICTDTKTMKEAFYISGCSHAYCSDCVANYIGSKLEDNIVNISCPVPECKGSLEAQICRTILPAEVFEKWSKGLCEALINASQKFYCPFANCSALLINDETEAVTNSECPNCNRMFCAQCKVPWHDGIKCSEFQKLKAGEREKEDIMLVRLAQNKHWRRCPNCKIYVARTMGCNIMRCRCQCSFCYKCGGTYTRTAPGRCTCNGTPQQPTPVFHGTTVSNSYLNYSGQQQQTPYGVYTGKYGTGGTYSYGGSFYPGRRR 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01888 347 CDD Rcat_RBR_unk 244 277 - -
Vivi4g01888 347 Gene3D - 214 319 - -
Vivi4g01888 347 Pfam Zinc finger, C3HC4 type (RING finger) 88 133 IPR018957 GO:0046872
Vivi4g01888 347 SUPERFAMILY RING/U-box 86 168 - -
Vivi4g01888 347 ProSiteProfiles Zinc finger RING-type profile. 88 136 IPR001841 -
Vivi4g01888 347 SUPERFAMILY RING/U-box 229 291 - -
Vivi4g01888 347 FunFam RBR-type E3 ubiquitin transferase 83 169 - -
Vivi4g01888 347 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 51 284 IPR031127 GO:0004842|GO:0016567
Vivi4g01888 347 ProSitePatterns Zinc finger RING-type signature. 106 115 IPR017907 -
Vivi4g01888 347 SMART ibrneu5 156 218 IPR002867 GO:0008270
Vivi4g01888 347 SMART ibrneu5 228 290 IPR002867 GO:0008270
Vivi4g01888 347 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 170 IPR013083 -
Vivi4g01888 347 ProSiteProfiles TRIAD supradomain profile. 84 299 IPR044066 -
Vivi4g01888 347 CDD BRcat_RBR_unk 169 221 - -
Vivi4g01888 347 Pfam IBR domain, a half RING-finger domain 162 218 IPR002867 GO:0008270
Vivi4g01888 347 SUPERFAMILY RING/U-box 162 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01888 Vivi-Chr4 87180738 87181936 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01888 88 278 C3H Transcription Factor Family AT2G19610 29.353 2.15e-19 86.7