Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vivi4g01886 | ATGGCTCCGGCAGCAACTACAAACGGAAGAAGAAATAGAGTTCCACCTTCCACACCAGAGGTTATCGACCTCGGCTCGTTCCGCTCATACGGCAAGCGAAAAATCTCCGCTATCATCAACCTTTCGGATGAAGTCAACGACGGCATTAAGATCCTCGATTTCATTCCTAAGCACATTCCTTTAAGAAAACGTAAGAGAAATTTCGAAAAAGGAGAGTGTTCAAATTCAAGTAACATTCCGTTCATCTGCGAAATCTGCACGGAAACTAAAACAATGAAGGAAGCTTTCTACGTCAAGGGCTGCTCTCACGCGTATTGCTCTGATTGCGTTGCAAATTACATCAGTTCCAAGCTTGAAGATAACATTATCAACATCTCATGTCCAGTTCCAGAATGCAAAGCTTCTTTAGAAGCACAGTTTTGCCGGACTATTCTTCCGGCTGAGGTTTTTGAAAAGTGGAGTAAAGCATTGTGCGAGGCTTTGATCAATGCATCGCAGAAATTCTACTGCCCTTTTGCAGACTGTTCTTCTCTTTTGATGTATGACAAAACGGAATCTGTTACAAATTCAGAATGCCCTAATTGTAATAGAATGTTCTGTGCACAATGTAAGGTTCCTTGGCACGATGGAATCGAATGCAGCGATTTCCAGAAGCTGAACGCGGGCGAGAGGGAGAAAGAAGATATTATGTTGATGCGCCTTGCACAAAATATGCACTGGAGGCGATGCCCTAATTGCAAAATTTATGTTGCCAGAACAATGGGCTGCAACATCATGAGATGCAGGTGTCAATGTCAATTTTGTTACAATTGTGGATGTGCCTACACTGATAGAGGCTGCAATTGTTGCAAACTCAATAGGACTCCACAACAACATCCACAGGTTTTTTCGGGAAGAAGGAATCTCATTTATGAGGAGGAGGTCTATGATGATGATGATGATGATGATGATGAGGAGGAGGTATATGAGGAGGAGGAGGTATATGAGGAGGATGTTGAGGAGGAGGTCTATGAGGAGGAGGTATATGACGAGGAGGATGTTTATGAGGAGGAGGAGGAGGAGGAGGATGAGGTATATGAGGAGGAGGTATATGAGGAGGAGGATGTTTATGAGGAGGAGGAGGAGGTATATGAGGAAGAGCTGAAGGAAAAGCTTGACAAAGTCTGTTTAACCACAAGTGAGAAAAGTTTCTTCATAGATTCAAGAGGATTCATTTGA | 1218 | 0.4319 | MAPAATTNGRRNRVPPSTPEVIDLGSFRSYGKRKISAIINLSDEVNDGIKILDFIPKHIPLRKRKRNFEKGECSNSSNIPFICEICTETKTMKEAFYVKGCSHAYCSDCVANYISSKLEDNIINISCPVPECKASLEAQFCRTILPAEVFEKWSKALCEALINASQKFYCPFADCSSLLMYDKTESVTNSECPNCNRMFCAQCKVPWHDGIECSDFQKLNAGEREKEDIMLMRLAQNMHWRRCPNCKIYVARTMGCNIMRCRCQCQFCYNCGCAYTDRGCNCCKLNRTPQQHPQVFSGRRNLIYEEEVYDDDDDDDDEEEVYEEEEVYEEDVEEEVYEEEVYDEEDVYEEEEEEEDEVYEEEVYEEEDVYEEEEEVYEEELKEKLDKVCLTTSEKSFFIDSRGFI | 405 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vivi4g01886 | 405 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 66 | 290 | IPR031127 | GO:0004842|GO:0016567 | |
| Vivi4g01886 | 405 | Coils | Coil | 334 | 354 | - | - | |
| Vivi4g01886 | 405 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 165 | IPR013083 | - | |
| Vivi4g01886 | 405 | MobiDBLite | consensus disorder prediction | 329 | 371 | - | - | |
| Vivi4g01886 | 405 | Coils | Coil | 367 | 387 | - | - | |
| Vivi4g01886 | 405 | SMART | ibrneu5 | 223 | 282 | IPR002867 | GO:0008270 | |
| Vivi4g01886 | 405 | SMART | ibrneu5 | 151 | 213 | IPR002867 | GO:0008270 | |
| Vivi4g01886 | 405 | SUPERFAMILY | RING/U-box | 154 | 218 | - | - | |
| Vivi4g01886 | 405 | SUPERFAMILY | RING/U-box | 224 | 282 | - | - | |
| Vivi4g01886 | 405 | Gene3D | - | 211 | 401 | - | - | |
| Vivi4g01886 | 405 | SUPERFAMILY | RING/U-box | 81 | 163 | - | - | |
| Vivi4g01886 | 405 | CDD | BRcat_RBR_unk | 164 | 216 | - | - | |
| Vivi4g01886 | 405 | ProSiteProfiles | TRIAD supradomain profile. | 79 | 289 | IPR044066 | - | |
| Vivi4g01886 | 405 | CDD | Rcat_RBR_unk | 239 | 272 | - | - | |
| Vivi4g01886 | 405 | ProSiteProfiles | Zinc finger RING-type profile. | 83 | 131 | IPR001841 | - | |
| Vivi4g01886 | 405 | Pfam | IBR domain, a half RING-finger domain | 152 | 213 | IPR002867 | GO:0008270 | |
| Vivi4g01886 | 405 | FunFam | RBR-type E3 ubiquitin transferase | 78 | 164 | - | - | |
| Vivi4g01886 | 405 | ProSitePatterns | Zinc finger RING-type signature. | 101 | 110 | IPR017907 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vivi4g01886 | Vivi-Chr4 | 87055375 | 87057013 | Dispersed/Proximal |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vivi4g01886 | 83 | 282 | C3H Transcription Factor Family | AT2G31770 | 29.327 | 1.35e-19 | 89.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vivi4g01886 | K11975 | - | gmx:100807821 | 308.916 |