Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01884 ATGGCTTCGGAAGCTACTCCAAGGAGAAGAAGGAATCGAGTTTCACCTTCCACACCAGAGGTAATCGACCTCGACTCTTTCCGCTCATACAGCAAGCCAACCATCTCCGCCGTCGTCGACCTTTCCGACGAAGAAGACGATGGCAATAAGATCCTCGATTTCATTCCTACGCACACTCCTTTAAGGAAACATAAGAGAAATTTCCAAAAAGGAGAGTCCTCAAATTCAAGTAACACTCAATTTGTCTGCGAAATCTGCTCCGAAACTAAAACAATGAAGGAAGCTTTCTACAACATCAGCGGCTGCTCTCACGCGTATTGCTCTGATTGCGTCGCTAATTACATCGCTTCCAAGCTTGAAAATAACATTGTCGACATCTCATGTCCAGTTCCCGAATGTAAAGCTTCTTTAGAAGCACAGTTTTGCCGGACGATTCTTCCAGCCGAGGTTTTTGAAAAGTGGAGTAAAGAGGCTGCTTCCCAAAAATTCTACTGTCCATTTGCAGACTGTTCTGCTCTTTTGATCGATGATAAAACGGAGGCTGTTAGAAATTCAGAATGCCCTAAGTGTAATAGGATGTTCTGTGCGCAATGTAAGGTTGCGTGGCATGATGGAATCGAATGCAGCGAGTTCCAGAAGCTGAACGCGGGCGACAGGGAGAAAGAAGATATTATGTTGGTGCGCCTTGCTAAGAAAATGCACTGGAGGCGATGTCCTAATTGCAAAATTTATGTGGACAAAGAATGCGGCGGCTGCGATGCCATGACATGCAGGTGTCAATGTCAATTTTGTTACAATTGTGGACTTGCCTACACTGATAGAGGCTGCAATTGTTGGAAACTCAATAGGACTCCACAACAACCTCCACAGGTTTTTTCTGGAAGAACTCTCACCAGAACTATCACTAATAGGAATCTCATCTATAATGATGATGATGATGATGATGTCTTTGAGGAGGAGGAGGACTCATTATAA 975 0.4421 MASEATPRRRRNRVSPSTPEVIDLDSFRSYSKPTISAVVDLSDEEDDGNKILDFIPTHTPLRKHKRNFQKGESSNSSNTQFVCEICSETKTMKEAFYNISGCSHAYCSDCVANYIASKLENNIVDISCPVPECKASLEAQFCRTILPAEVFEKWSKEAASQKFYCPFADCSALLIDDKTEAVRNSECPKCNRMFCAQCKVAWHDGIECSEFQKLNAGDREKEDIMLVRLAKKMHWRRCPNCKIYVDKECGGCDAMTCRCQCQFCYNCGLAYTDRGCNCWKLNRTPQQPPQVFSGRTLTRTITNRNLIYNDDDDDDVFEEEEDSL 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01884 324 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 49 283 IPR031127 GO:0004842|GO:0016567
Vivi4g01884 324 FunFam RBR-type E3 ubiquitin transferase 78 165 - -
Vivi4g01884 324 Gene3D - 210 322 - -
Vivi4g01884 324 Gene3D - 163 209 - -
Vivi4g01884 324 CDD Rcat_RBR_unk 234 268 - -
Vivi4g01884 324 ProSiteProfiles TRIAD supradomain profile. 79 282 IPR044066 -
Vivi4g01884 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 76 162 IPR013083 -
Vivi4g01884 324 CDD BRcat_RBR_unk 159 211 - -
Vivi4g01884 324 SUPERFAMILY RING/U-box 78 166 - -
Vivi4g01884 324 ProSiteProfiles Zinc finger RING-type profile. 83 132 IPR001841 -
Vivi4g01884 324 SUPERFAMILY RING/U-box 159 213 - -
Vivi4g01884 324 SUPERFAMILY RING/U-box 220 278 - -
Vivi4g01884 324 ProSitePatterns Zinc finger RING-type signature. 102 111 IPR017907 -
Vivi4g01884 324 Pfam Zinc finger, C3HC4 type (RING finger) 83 129 IPR018957 GO:0046872
Vivi4g01884 324 Pfam IBR domain, a half RING-finger domain 157 208 IPR002867 GO:0008270
Vivi4g01884 324 SMART ibrneu5 220 278 IPR002867 GO:0008270
Vivi4g01884 324 SMART ibrneu5 149 208 IPR002867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01884 Vivi-Chr4 87037298 87038432 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01884 97 268 C3H Transcription Factor Family AT2G19610 32.105 9.74e-18 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01884 K11975 - cit:102613446 281.567