Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01882 ATGAAAACGACAACAACGACCACATCAACGACCGTCGTTCCCACATCAACGACAGAAGTTATCGACGTCGAATCATTTCATCTCCCTCCGACCACCACCACACCCTCCGCCCCCGTCGTCATAGACCTTTCCGACGGCGAAGATGACGACGAAGTCAGAATTCTCAATTTCGTCCCCAAATTCAATCCTGTGCGAAAACGACAAAGGATCAAGGTCGAAAAAGGCGAGTCTTCTTCGGCTCATGCTAACACAAACGTCGTGCCGTTTATCTGCGAAATTTGCACGGAGACGAAAACCGCGAACGATGCTTTCTTCATCAGCGGTTGTTATCATGCTTACTGTTCGGATTGCGTCGCTTTGTACGTCAGTTCGAAGCTGGAAGATAATGTGATCAACGTCAGGTGTCCTGTTTCTGGTTGCAGTGGTTTGTTGGAAGCTGAGGAATGTCGTTCGATTCTTCCGGTCGAGGTTTTTGATCGGTGGGGGAAGGCGGCGTGCGAGGCCTTGTTTGATGTATCGGAGAAATTCTATTGTCCGTATGCGGATTGTTCTGCTCTGTTGATCAATGATGGGACGGAGGCTGTGAAGCATTCGGAGTGTCCGAATTGTAGGAAGCTGTTTTGTGCTCAATGTAAGGTTCCATGGCATGATGGGATTGAGTGTAGCGAGTTTCAGAAGCTGAATGCGGATGAGAGAGGGAAGGATGATGTTATGCTGATGCGGCTCGCGAAGGATATGAATTGGAGGAGATGCCCTAATTGTAGGTTTTATGTTGCGAAATCGGAGGGTTGCTTGTACATGAAATGCAGGTGTGGAATTGCCTTCTGTTACAACTGTGGAGCTCGTCACCAAAATCATAGCAGCCATTTTTGCACCAACTGTAAACGCTGA 891 0.4826 MKTTTTTTSTTVVPTSTTEVIDVESFHLPPTTTTPSAPVVIDLSDGEDDDEVRILNFVPKFNPVRKRQRIKVEKGESSSAHANTNVVPFICEICTETKTANDAFFISGCYHAYCSDCVALYVSSKLEDNVINVRCPVSGCSGLLEAEECRSILPVEVFDRWGKAACEALFDVSEKFYCPYADCSALLINDGTEAVKHSECPNCRKLFCAQCKVPWHDGIECSEFQKLNADERGKDDVMLMRLAKDMNWRRCPNCRFYVAKSEGCLYMKCRCGIAFCYNCGARHQNHSSHFCTNCKR 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01882 296 SMART ring_2 91 138 IPR001841 -
Vivi4g01882 296 Pfam Zinc finger, C3HC4 type (RING finger) 91 136 IPR018957 GO:0046872
Vivi4g01882 296 SUPERFAMILY RING/U-box 232 295 - -
Vivi4g01882 296 SUPERFAMILY RING/U-box 89 172 - -
Vivi4g01882 296 Pfam IBR domain, a half RING-finger domain 174 221 IPR002867 GO:0008270
Vivi4g01882 296 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Vivi4g01882 296 FunFam RBR-type E3 ubiquitin transferase 223 296 - -
Vivi4g01882 296 ProSiteProfiles TRIAD supradomain profile. 87 295 IPR044066 -
Vivi4g01882 296 SUPERFAMILY RING/U-box 168 226 - -
Vivi4g01882 296 Gene3D - 217 296 - -
Vivi4g01882 296 FunFam RBR-type E3 ubiquitin transferase 87 172 - -
Vivi4g01882 296 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 87 171 IPR013083 -
Vivi4g01882 296 CDD BRcat_RBR_unk 172 224 - -
Vivi4g01882 296 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 63 295 IPR031127 GO:0004842|GO:0016567
Vivi4g01882 296 SMART ibrneu5 231 291 IPR002867 GO:0008270
Vivi4g01882 296 SMART ibrneu5 159 221 IPR002867 GO:0008270
Vivi4g01882 296 CDD Rcat_RBR_unk 247 282 - -
Vivi4g01882 296 ProSiteProfiles Zinc finger RING-type profile. 91 137 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01882 Vivi-Chr4 86873592 86876363 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01882 91 281 C3H Transcription Factor Family AT2G19610 31.841 4.21e-24 99.4