Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01879 ATGGCACTTTCTTCAACAAAACCAAACCCCACTCTCACATTCATTTTTTCAACCTTTGTGTTATGCAGTACAACATTACTGTGTTGTGCTAGTGTTCCAACCAAAACAGAAGCTGGATTTGAGTTTCTTAAGGTTGCTCCATCGGAGTTTGTTGGGTCAGTGAATGATGTGGTTGATATTTTGCAACAGGTTACAAGTATTCTTTCGCAATTTGGTGGTGATGGGTTTGGTGATTCGCGTTTATCAAATGCTGTTTCTGATTGTATTGATTTGCTTGACCTTTCATCTGATGCTCTTACTTGGTCTGTTTCTGCTACTCAGAACCCCCAAGGTAAGCATAATAGTACAGGAAACGTGAGCTCTGATGTAAGAACATGGCTAAGTGCCGCACTTGCAAATCCAGAGACCTGCCAAAACGGATTCGAAGGTACAAATGGCATTGCAAGCACTTTAGTCTCCACTGGCCTAGGCCAAATGATGTCACTTCTCACAGAGCTTCTCACACAAGTGAACCCTAACTCCGATAGCTTCGCAACAAAGCAAGCACAAAAAGGCCAGTTTCCTGCATGGTTCAAACGAGAAGACAGAAAGCTCTTGATGGCAAATGGTGTGGCTGTTGACGTAGTGGTTGCTAAGGACGGTAGCGGCAATTTTACGACGGTGATGGATGCGGTGCATGCAGCTCCTGATTATAGCATAAAACGGTTTGTGATTTATGTGAAGAGAGGGGTTTATGTTGAGAATGTTGAAATAAAGAAGAAGAAATGGAATCTTATGATGGTTGGAGATGGTATGAATGCGACGGTTATTTCGGGTAATCGGAGCTTCGTCGACGGGTGGACCACGTTCAGATCAGCTACCTTTGCTGTGAGTGGCAGAGGATTTATAGCAAGAGACATCAGTTTTCAAAACACTGCAGGACCTGAGAAGCACCAAGCAGTGGCATTAAGATCCGACTCCGACCTTTCCGTATTTTATCGATGCGGAATTTTTGGTTACCAAGATAGTCTCTATACTCACACAATGCGTCAATTCTATCGCGAATGCAAAATCAGCGGCACCGTGGATTTCATCTTTGGCGACGCCACGACAGTTTTTCAAAACTGTCAAATACTAGTCAAGAAAGGCTTACCAAATCAGAAAAACACCATCACTGCTCAAGGACGAAAAGATCCCAATGAGCCAACCGGTTTCTCAATCCAGTTCTGCAACATCACTGCTGATACCGATCTTCTTCCTTTGATTAACTCCACCTGGACGTATCTTGGAAGACCCTGGAAACAATATTCGAGAACAGTTTTCATGCAATCTCATATAAGTGATGTGTTGCGGCCGGAAGGGTGGCTAGAATGGAATGGAGATTTCGCGTTGGATACATTATACTATGCGGAGTACATGAATTATGGTCTCGGAGCCGGATTGAATAAACGAGTTAAATGGCCGGGATATCATATTATAAATGATTCAAGTCATGCTAATAACTTCACAGTAACACAATTTCTTGAAGGGAATCTATGGTTGCCTACAACAGGTGTGTCCTTTACTGCTGGACTAGAAGTTTGA 1563 0.4312 MALSSTKPNPTLTFIFSTFVLCSTTLLCCASVPTKTEAGFEFLKVAPSEFVGSVNDVVDILQQVTSILSQFGGDGFGDSRLSNAVSDCIDLLDLSSDALTWSVSATQNPQGKHNSTGNVSSDVRTWLSAALANPETCQNGFEGTNGIASTLVSTGLGQMMSLLTELLTQVNPNSDSFATKQAQKGQFPAWFKREDRKLLMANGVAVDVVVAKDGSGNFTTVMDAVHAAPDYSIKRFVIYVKRGVYVENVEIKKKKWNLMMVGDGMNATVISGNRSFVDGWTTFRSATFAVSGRGFIARDISFQNTAGPEKHQAVALRSDSDLSVFYRCGIFGYQDSLYTHTMRQFYRECKISGTVDFIFGDATTVFQNCQILVKKGLPNQKNTITAQGRKDPNEPTGFSIQFCNITADTDLLPLINSTWTYLGRPWKQYSRTVFMQSHISDVLRPEGWLEWNGDFALDTLYYAEYMNYGLGAGLNKRVKWPGYHIINDSSHANNFTVTQFLEGNLWLPTTGVSFTAGLEV 520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01879 520 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 153 IPR035513 -
Vivi4g01879 520 PANTHER PECTINESTERASE 22 509 - -
Vivi4g01879 520 Coils Coil 516 520 - -
Vivi4g01879 520 CDD PMEI-like_4 11 174 - -
Vivi4g01879 520 SMART PMEI_2 10 169 IPR006501 GO:0004857
Vivi4g01879 520 ProSitePatterns Pectinesterase signature 2. 351 360 IPR033131 -
Vivi4g01879 520 Pfam Pectinesterase 207 504 IPR000070 GO:0030599|GO:0042545
Vivi4g01879 520 Pfam Plant invertase/pectin methylesterase inhibitor 78 153 IPR006501 GO:0004857
Vivi4g01879 520 ProSitePatterns Pectinesterase signature 1. 232 251 IPR018040 -
Vivi4g01879 520 SUPERFAMILY Pectin lyase-like 203 517 IPR011050 -
Vivi4g01879 520 Gene3D Invertase/pectin methylesterase inhibitor family protein 21 171 IPR035513 -
Vivi4g01879 520 NCBIfam pectinesterase inhibitor domain 63 147 IPR006501 GO:0004857
Vivi4g01879 520 Gene3D - 205 520 IPR012334 -
Vivi4g01879 520 FunFam Pectinesterase 201 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01879 Vivi-Chr4 86677463 86681536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01879 40 518 Carbohydrate Esterase AT3G43270 64.694 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01879 K01051 - gmx:100777500 777.319