Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01868 ATGATGATGCAAGGAAGTGGAGAATTAACAGTTCCTCCAGGGTTCAGGTTCCACCCAACTGATGAAGAGCTTCTTTACTATTACCTGAGGAAGAAAGTTTCTTATGAAGCCATTGATCTTGATGTTATCAGAGAAGTTGATCTAAACAGACTTGAGCCTTGGGATCTCAAAGATAAGTGTAGGATTGGATCAGGGCCACAGAATGAGTGGTATTTCTTCAGCCACAAGGACAAGAAATACCCAACAGGAACAAGAACAAATAGAGCAACTACAGCTGGGTTTTGGAAAGCAACTGGAAGAGACAAAGCCATATATCACACAAATTCCAAAAGGATTGGTATGAGGAAAACCCTAGTCTTCTACACTGGACGTGCTCCTCATGGCCACAAAACTGACTGGATCATGCATGAGTACCGTCTTGACGACGATGATAATGCAGAAGTTCAGGAAGATGGATGGGTTGTATGTAGGGTTTTCAAAAAGAAAAACACAACCAGAGGTTACCAACAAGAAATTGAAGAAGAAGATCACATGATTAACCACATGAGATCAACAAATGGAGGTCCATGCCATCAGATGCTAGAGCAAAAACATCATCATCATCACATGCAACAATTAGGACTATATGATTTCAACAACAATCACCACAACAACTTTGATGGTACAATTCACCTACCACAGTTATTCAGTCCAGAATCATCAGCTCTAGCACCACAGCCACCACCACCAACTTCCTTTCACAATTCATCCATGGACATCCTTGAATGTTCTCAAAACTTGTTGAGGCTCACAACAACAAATACTACCTCTGGACTTAATCTCATGCAGCAACAGCAACATCAACAAGGAGAGAGGTTGATCAATGGAGGTGATTGGTCATTCTTGGATAAACTACTTGCATCTCATCACCATGGAAATATGGATCAGAATCTGAGAAACAAGTTATGTAACCCTCTTCATAATCAGCAGGCTGCATCTGCTGATGTTGGATCAACTTCTGCTCAGAAATTTCCATTTCATTACCTTGGTTGTGAGCCTCATCCTCATGATATTATGAAATTTTCAAAGTAA 1071 0.4062 MMMQGSGELTVPPGFRFHPTDEELLYYYLRKKVSYEAIDLDVIREVDLNRLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKATGRDKAIYHTNSKRIGMRKTLVFYTGRAPHGHKTDWIMHEYRLDDDDNAEVQEDGWVVCRVFKKKNTTRGYQQEIEEEDHMINHMRSTNGGPCHQMLEQKHHHHHMQQLGLYDFNNNHHNNFDGTIHLPQLFSPESSALAPQPPPPTSFHNSSMDILECSQNLLRLTTTNTTSGLNLMQQQQHQQGERLINGGDWSFLDKLLASHHHGNMDQNLRNKLCNPLHNQQAASADVGSTSAQKFPFHYLGCEPHPHDIMKFSK 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01868 356 FunFam NAC domain-containing protein 20 165 - -
Vivi4g01868 356 Gene3D NAC domain 20 166 IPR036093 GO:0003677|GO:0006355
Vivi4g01868 356 ProSiteProfiles NAC domain profile. 11 161 IPR003441 GO:0003677|GO:0006355
Vivi4g01868 356 Pfam No apical meristem (NAM) protein 12 140 IPR003441 GO:0003677|GO:0006355
Vivi4g01868 356 SUPERFAMILY NAC domain 3 161 IPR036093 GO:0003677|GO:0006355
Vivi4g01868 356 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 10 251 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01868 Vivi-Chr4 85863912 85866352 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01868 3 356 NAC Transcription Factor Family AT1G79580 51.407 6.96e-115 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vivi4g01868 NAM 8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01868 - - gmx:100789606 477.248