Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01831 ATGGATTGCCGAATCGAAACCGCAGAAACTCGCAGGAACAAGTGTGCAGCATGCTATAGGCAGTTCAACAGAGTGGAGCATCTAGTGGATCACATGAAGATCTCTTATCATTCTGTTCATGAACCAACCTGTGGTATTTGCAGGAAACATTGCAGATCCTTTGAGTCTCTAAGGGAACATCTTATAGGTCCATTGCCAAAACCAGAATGCAAAGAAATCTTTGCTAACCGAGGGTGCAAGTTTTGCTTGAAAGTCTTTGATAGCCCTAACTCTCGTAGGATCCATCAACAAAAGTGTCAACTCTCTGGATTAAGTGGAATATGTGGCCGATTTTCAAACTTGGGAATTCGGGATAACTTGACAATTGGTGGGGGAAGAGGACCACAAGTAGTTGCACTAGCTTGTAAAATGGTGGGAGGTGGAAGTGATGGTTCACTTGATCTTTGTGCAAGAGTTTGCTTAATAGATGAACATGAGAATATTATCTTCCATTCTTATGTTACTCCACCAATTCCAATCACAAACTACAGGTATGAGACAACTGGTATTAGACATGAATACTTAAGAGATGCAATGCCATTGAAACTAGTTCAAAGGAAGATTCAAGATTTTCTTTGTAATGGAGAACCCATTTGGACAATTCGTTCAAAGGGAGGAAAAGCTAGGATTCTTGTGGGTCATGGTTTAGATCATGACCTTGCATCTTTGCAAATTGATTATCCAACACCAAAAATAAGGGACACTGCAAAATATCCTCCACTCATGAAAACTAGCAAGCTCAGCAACTCACTCAAATACCTAACACAAGCATATCTTGGGTATGATATTCAAACTGGAATACAAGATCCTTATGATGATTGTGTTGCAGCAATGAGACTCTACATGAGAATGAGAACACAGATGCACAAAACAGAAGATTATCCTTTGGCATCTGATCCTCAAAACAGGAATAACTTTGCTTCATGGAGGCAAAGTGAGCTTGAAAGAATGAGTCCTGAACAAATGCTAGAATTCTCAAGGTCTGACTACTACTGCTGGTGCTTGGATCCATGA 1053 0.4027 MDCRIETAETRRNKCAACYRQFNRVEHLVDHMKISYHSVHEPTCGICRKHCRSFESLREHLIGPLPKPECKEIFANRGCKFCLKVFDSPNSRRIHQQKCQLSGLSGICGRFSNLGIRDNLTIGGGRGPQVVALACKMVGGGSDGSLDLCARVCLIDEHENIIFHSYVTPPIPITNYRYETTGIRHEYLRDAMPLKLVQRKIQDFLCNGEPIWTIRSKGGKARILVGHGLDHDLASLQIDYPTPKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGYDIQTGIQDPYDDCVAAMRLYMRMRTQMHKTEDYPLASDPQNRNNFASWRQSELERMSPEQMLEFSRSDYYCWCLDP 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01831 350 ProSitePatterns Zinc finger C2H2 type domain signature. 15 37 IPR013087 -
Vivi4g01831 350 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 17 344 IPR047021 GO:0004527
Vivi4g01831 350 CDD REX4_like 131 294 IPR037431 GO:0006364|GO:0008408
Vivi4g01831 350 FunFam RNA exonuclease 4 126 313 - -
Vivi4g01831 350 Gene3D - 128 313 IPR036397 GO:0003676
Vivi4g01831 350 Pfam Exonuclease 149 293 IPR013520 -
Vivi4g01831 350 SUPERFAMILY Ribonuclease H-like 143 301 IPR012337 -
Vivi4g01831 350 ProSiteProfiles Zinc finger C2H2 type domain profile. 13 42 IPR013087 -
Vivi4g01831 350 SMART exoiiiendus 129 303 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01831 Vivi-Chr4 83711063 83713334 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01831 1 349 C2H2 Transcription Factor Family AT3G27970 73.164 0.0 555