Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01828 ATGACGACGGCTCCACCACCAACGCCGCCGCCACTCGAACTCAAAACCTACTGGTGCCACGAATGCGACATGAGCGTCTCCCTCACTTCCTCCTCCTCTCCCTCTCCTCTCCTCTGCCCTCAATGTCACACCCATTTCCTCGAACTCATGGACTCCCCTTTCTCCCAAAACGACGCCGATTCGTTTCTCCCTTCTTCCTCCCTCTTCGACGTCGTTTTCCAAGACGCGCTTTTACTACTCGCACCTCCTCCATCTAAAACCCGAACAGAAACAATAATTCCTATAATAACCGTTACAGAAACTCTTCTTTCTTTACTCGATCCAAACGGCGTCGTTTTATGCGCGGTTTGTAAGGATGCTATTTCCGTTGACGAAGAAGCGAAACAGCTTCCTTGTGATCATCTTTACCACTCCGATTGTATTACTCCATGGCTTCGTCTTCGATCTTCTTGTCCTCTCTGTCGATTCAGAATCTCAGAAGATGAAGATGAAGATGAAAATGACGAAGATGATGAGGAAGATGTCAATGGTGCTGATATGATGAGGGAGATGATGGCGCGGATGTCGGAGTTGTCGGAGGATGATTTCTATGGCCTGAGAATGACTCTCAATTACATTGCTTCCCGGCATGAACTTCTTCATTCTAATGCTTCTGGCGGCGGTGATAATCATGATGCTAGTAGTGAAGTTGGTGGAGATGTAGATGGAGGATCTTGA 717 0.477 MTTAPPPTPPPLELKTYWCHECDMSVSLTSSSSPSPLLCPQCHTHFLELMDSPFSQNDADSFLPSSSLFDVVFQDALLLLAPPPSKTRTETIIPIITVTETLLSLLDPNGVVLCAVCKDAISVDEEAKQLPCDHLYHSDCITPWLRLRSSCPLCRFRISEDEDEDENDEDDEEDVNGADMMREMMARMSELSEDDFYGLRMTLNYIASRHELLHSNASGGGDNHDASSEVGGDVDGGS 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01828 238 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Vivi4g01828 238 SMART ring_2 114 154 IPR001841 -
Vivi4g01828 238 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 108 173 IPR013083 -
Vivi4g01828 238 MobiDBLite consensus disorder prediction 216 238 - -
Vivi4g01828 238 Pfam Ring finger domain 114 155 IPR001841 -
Vivi4g01828 238 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 56 157 - -
Vivi4g01828 238 Pfam zinc-ribbon 16 50 IPR039525 GO:0061630
Vivi4g01828 238 SUPERFAMILY RING/U-box 111 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01828 Vivi-Chr4 83684706 83687719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01828 1 206 C3H Transcription Factor Family AT1G68180 27.426 4.46e-19 81.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01828 K11982 - gmx:100782164 238.424