Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01785 ATGATTTTCTGTTGCTTTGGTGGTTTGAATTGGTGTAAAGGGAAGGGTGAACCTGCTGAGCAGATACTTGAACAAGTGGGGGAAACTAAAAGCTTTAGCTATAGCTCATTGAGATCTGCTACGGGAGATTTTCATTCTTCATGCAAAATTGGTGGAGGAGGTTATGGAGTTGTCTACAAGGGTGTTTTAAGGGACGGCACTCAAGTTGCTATCAAGTCTCTTTCTGTAGAGTCTAAACAAGGAACTCGTGAATTCATGACAGAAATTGAGATGATATCAAATATACAACATCCAAATCTTGTTAAGCTGATCGGCTTCTGTATTGAGGGTAATCATCGAATATTGGTGTACGAGTTTCTCGAGAACAATAGCCTCGCGAGTGCTTTGTTAGGTTCAAAAAGTAAATGTGTTCCTCTGGATTGGCGAAAGAGGGCTGCTATTTGCTGCGGTACAGCTTCGGGTCTAACCTTTCTTCACGAAGAGACTCAGCCAAATATTGTTCATAGAGATATCAAAGCAAGCAACATATTGCTGGACGAGAACTTCAATCCGAAAATCGGTGATTTTGGTCTTGCAAAACTTTTTCCTGACAATGTCACCCATGTTAGTACTCGAGTTGCAGGAACAATGGGATATCTTGCACCAGAATACGCACTTCTAAGACAGCTTACAAAGAAGGCAGATGTATACAGTTTTGGGATTCTGATGCTTGAAATAATCAGTGGTAAAAGTAGTAGCAAAGCTGCATTTGGAGACAATATTTTGGTTCTGGTGGAATGGGCTTGGAAGCTGAAAGAAGAAAACCGGCTTCTAGAACTTGTTGATTCAGAACTAACCGATTACGAAGAGAACGAGGTGTATAGGTTCCTTGTGGTTGCTCTCTTCTGCACCCAATCATCAGCTACACATAGACCAACCATGAAACAAGTACTACAAATGCTCTCCAAACAAGTTCATCTTAATGAGAAGGCATTAACTGAGCCTGGAATATACAGATGGGATACCTCGGGAAAGACGAGCAGCTATTTGAACGAGACGTCATCGTCGTCTCAAGTAATCAAGTACAAAAAATCCGAAAATCAACACCGAACATCGACACAATTTAGCGGTACAGATATTGTGACAGAGATGTTTCCTAGATGA 1143 0.4121 MIFCCFGGLNWCKGKGEPAEQILEQVGETKSFSYSSLRSATGDFHSSCKIGGGGYGVVYKGVLRDGTQVAIKSLSVESKQGTREFMTEIEMISNIQHPNLVKLIGFCIEGNHRILVYEFLENNSLASALLGSKSKCVPLDWRKRAAICCGTASGLTFLHEETQPNIVHRDIKASNILLDENFNPKIGDFGLAKLFPDNVTHVSTRVAGTMGYLAPEYALLRQLTKKADVYSFGILMLEIISGKSSSKAAFGDNILVLVEWAWKLKEENRLLELVDSELTDYEENEVYRFLVVALFCTQSSATHRPTMKQVLQMLSKQVHLNEKALTEPGIYRWDTSGKTSSYLNETSSSSQVIKYKKSENQHRTSTQFSGTDIVTEMFPR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01785 380 FunFam cold-responsive protein kinase 1 15 119 - -
Vivi4g01785 380 SUPERFAMILY Protein kinase-like (PK-like) 24 314 IPR011009 -
Vivi4g01785 380 Gene3D Transferase(Phosphotransferase) domain 1 120 328 - -
Vivi4g01785 380 ProSitePatterns Protein kinases ATP-binding region signature. 50 72 IPR017441 GO:0005524
Vivi4g01785 380 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 29 351 - -
Vivi4g01785 380 CDD STKc_IRAK 63 316 - -
Vivi4g01785 380 ProSitePatterns Serine/Threonine protein kinases active-site signature. 166 178 IPR008271 GO:0004672|GO:0006468
Vivi4g01785 380 Coils Coil 264 284 - -
Vivi4g01785 380 ProSiteProfiles Protein kinase domain profile. 44 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01785 380 SMART serkin_6 44 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01785 380 FunFam Putative LRR receptor-like serine/threonine-protein kinase 120 326 - -
Vivi4g01785 380 Gene3D Phosphorylase Kinase; domain 1 12 119 - -
Vivi4g01785 380 Pfam Protein kinase domain 45 312 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01785 Vivi-Chr4 81028561 81031816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01785 20 350 Receptor kinase-like Gene Family AT1G56120 51.057 2.21e-106 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vivi4g01785 Pkinase 2.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01785 - - gmx:100816683 581.252