Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01781 ATGGAACTTGGTTTAACCTTAGGAGATTCTCCAAAGCCTCTAATTGGCTTAATGGAAAAACATCCTCATCAAGGTTCTAAAGAACTTGGCCTAGGCTTCAACACCACTTTATCTATTGGCCCAAACATGACTTCTCAAAGAGATCAACTTCAACAAGAAGAACAAAATACTAGAACTGAAAATTTGCATCAACTTGATCTTCTTCCTCAACTCTCCTTCCCATGGAATCCTCCTTCTCAAAACGAGTTTGGAGTTTCATCAAGGGGCTTGGAAGTGAACATGGTTCCACCGGTAACCGCCGTGGCTATGGCGGAAGATGAAGCTGTTCTTTCATCGTCACCTAACAGTGCAGCATCTTCTTTTCAGATGGATCTTTGTATATACAGCCGAGGTGGAAGTGGTTGTGGTGGCGGCGGCGGTGGGAGTTTGAGTGGCTCAGGCGATGGTGAAGGTTATGATCAAAGAAATTCTTCAAGAGTTAGCGATGAAGACGATAACAGTGGCGTTGGAAACACAAGGAAGAAACTTAGACTCTCAAAAGATCAATCTGCTTTTCTTGAAGAAAGCTTCAAAGAACACCACACTCTTAATCCAAAACAAAAACTGGCACTTGCAAAACAACTCAACCTCCGACCACGTCAAGTAGAAGTTTGGTTCCAAAACAGAAGAGCAAGGACAAAGTTGAAGCAAACAGAAGTGGATTGTGAATATCTAAAGAGATGCTGTGAGACACTAACGGAAGAGAATAGAAGACTACACAAGGAGCTTCAAGAATTAAGAGCTTTAAAAACTTCAAATCCATTCAACATGCAGTTACCAGCAACTACTTTAACTATGTGTCCTTCTTGTGAACGTGTTGCCACGAATTCTACAGCAACTTCTTCTGTCACTAATACAAGTGCCACTATACATGCTAATAGTACTAATAACAAAACAAGTGATGATTCAACTTCAAAGGTTGATATTGGATTCCCTTTTGGAAAATCAAAGTTTCAGCCACAACAACATCTTGAGTTGAATTGA 1023 0.4066 MELGLTLGDSPKPLIGLMEKHPHQGSKELGLGFNTTLSIGPNMTSQRDQLQQEEQNTRTENLHQLDLLPQLSFPWNPPSQNEFGVSSRGLEVNMVPPVTAVAMAEDEAVLSSSPNSAASSFQMDLCIYSRGGSGCGGGGGGSLSGSGDGEGYDQRNSSRVSDEDDNSGVGNTRKKLRLSKDQSAFLEESFKEHHTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELQELRALKTSNPFNMQLPATTLTMCPSCERVATNSTATSSVTNTSATIHANSTNNKTSDDSTSKVDIGFPFGKSKFQPQQHLELN 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01781 340 Pfam HD-ZIP protein N terminus 27 121 IPR006712 GO:0005634
Vivi4g01781 340 Gene3D - 177 227 - -
Vivi4g01781 340 ProSiteProfiles 'Homeobox' domain profile. 169 229 IPR001356 GO:0003677
Vivi4g01781 340 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 41 311 - -
Vivi4g01781 340 Pfam Homeobox associated leucine zipper 229 263 IPR003106 GO:0006355|GO:0043565
Vivi4g01781 340 ProSitePatterns 'Homeobox' domain signature. 204 227 IPR017970 GO:0000981|GO:0006355
Vivi4g01781 340 Pfam Homeodomain 173 227 IPR001356 GO:0003677
Vivi4g01781 340 CDD homeodomain 173 230 IPR001356 GO:0003677
Vivi4g01781 340 SMART HOX_1 171 233 IPR001356 GO:0003677
Vivi4g01781 340 MobiDBLite consensus disorder prediction 137 176 - -
Vivi4g01781 340 FunFam Homeobox-leucine zipper protein 18 156 234 - -
Vivi4g01781 340 SUPERFAMILY Homeodomain-like 162 230 IPR009057 -
Vivi4g01781 340 SMART halz 229 272 IPR003106 GO:0006355|GO:0043565
Vivi4g01781 340 Coils Coil 242 265 - -
Vivi4g01781 340 MobiDBLite consensus disorder prediction 155 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01781 Vivi-Chr4 80734704 80736584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01781 25 292 Homeobox Transcription Factor Family AT5G47370 50.923 4.01e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vivi4g01781 HD-ZIP_N 8.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01781 K09338 - gmx:100805312 409.068