Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01772 ATGGAAAACCACCAAAACCAAAACAAAAACCTAAACCAAGACCACCAACAACAACACCATGCTTGGGGCACGTGGGAGGAGCTTCTACTAGCCTGCGCCGTCAACCGCCATGGCTTCAAAGACTGGGACACCGTCGCCATGGAGGTTCAGTCACGAACCAACCGCCCCACGCTCCTCGCCACCGCACACCACTGCGAACAGAAATTTCACGATCTAAGCCGCCGATTCACCGACGACGTTCCTCCGCCGCAACAGAATGGGGACGCCGCCGCTTTCGATTGCGATCATGTACCCTGGCTTCACAAATTGAGGAAACAACGCGTTGCTGAGCTCCGGCGTGATGTCCAACGCAGCGACGTCTCCATTTTGTCGCTGCAGTTGCAGGTGAAGAAGTTGCAGGAAGAAAAAGCGAAAGAAAATGACGGAGAAGAAGATAAAAAACCAGATCTGGCGGTTACAGGTGAGGAAGAGCGGCCGGAAAAAGAAAAAACCGGTGGAGAAATGGAAGAGGCCAAACCAGTGAATTCCGAACCGGATATTCGCCGGCTTGAGGAAAGCACAACTAATACTGATAAGGTGTTACCAACAACAGGGGATGAATCGGACCGAGACAATCAATCGGTTAATGAGTCGAACTCAACCGGTTCGAGGTTCGAGGCAGCGAAAACCGGTGAGGTTGATGTAAAAGTAGAACCCGGTCCGGTTCCTATTCATTCCGGTTTGAAAGAACCGGATCAAACCGTGAGAAAGAAAAAATCGGTTGAAGAGGAATCGAATAACGGAAGCTACGATAACGATAACGAGGCTAAAGTTCTTACGTTTGAGTCGGTTCCGCCGAGTGAAAAGAGGAAGGTGGAGGGTGACTCGTCCGAGTTGCATGACTCGGTGACTCACTCGGAGGAGGGAGGCACGAGGGAAAGCAGCGAGGTGCAGAGTTCTTCGAGTTTGACGAAAACGAGGAAGTCGCGGCAGAAGAAGGAGGTTTCGGGCGGAGAAGTTTTGCCAGAGAATGAAAACGTAGTAGCTACGGTGAAATCTGAACCGTTGGTTGAGGTCTTGGAGATGATTAAAAGACATGAAAAATTTTCATTATTTGAGCGCCGTCTTGAAAAAAATCAGGATTCGGATAAATACAAAGACATTGTGAAACAGCACCTGGACTTGGAAACCATACATTCGAGACTCCAAAAGGGTCATTATTCCTCATGCGCTAACTCATTCTTCCGTGACCTTCTCCTGCTCTTCACCAACGCCACTGTTTTCTTCAATCATGACTCACCTGAATCACGGGCGGCGCAGCAGCTGTTCCGCCTTGTCGTTGCTGAGATGAGAAGCTGCAGCCAAGCACAGTCTGAACCTATCACCCAAAAGAACGATTCACTTCCTCCAAACCCACCATTATCCAAACCAGATTCTGTTCTTCCCAAGCACAAAACCGCTGCTCCTATAATAGTTTGCCGCAAACGAACTCCAATCTCTGTTAAACCTTCCACAACCACCTTTAGCCAAAAGGGTGATCAGTCCATCAACAATGACAAGAAGGAAAGATCATCTTCAGATGCCAAACCAATCTTGAAACAAATTAATTCTGAGACAGACGAAGACGAGCCTCCCAAGACCAAGGAAAAGCCTGTCACTGGAGCCAGAAGTAGAAGAAGCAGCAAGAGCCACAACAGTAACACTGGCGATAAGAAACTACTCTCTAACTCCACCCCCAAAACAGGATCCTCAGCAAAAAAGCCAGTTGAGACTCCAAAATTGGATAAGAACAAAACAGAAGGGATGTCAGACAAGAAGAAGAATGCCGCCGCCGATTTCTTGAAGAGAATAAAGCGAAATGCATCAGCGGAGGTGATGAAAAGTGGTGGTAGCGGTGGAGGAGGAAGTAGTGGCAGCAGTAAGGGTGGTGGAAGTGGTGCTAATACGAAAGATCAGAAGAAAATAGTGAGTAGTGGAAAGGGGGAGAAAGGGAAAGAAAGATCATCAAGGTATGACGATGGAGGAGGGCCAGGGTCAGGGGATAAAAAGAATAAGAATATCGAGCACAGCTCTCAGTCGAGGAGGAGTGTTGGGAGACCTCCAAAGAAAGCAGAAACCAGTGTAGTTAAGCGCGGAAGGGAAAGTAGTGCAAGTGGCGGGAAAGATAAGCGACCGAAAAAACGTTCAAAGAAATGA 2175 0.4828 MENHQNQNKNLNQDHQQQHHAWGTWEELLLACAVNRHGFKDWDTVAMEVQSRTNRPTLLATAHHCEQKFHDLSRRFTDDVPPPQQNGDAAAFDCDHVPWLHKLRKQRVAELRRDVQRSDVSILSLQLQVKKLQEEKAKENDGEEDKKPDLAVTGEEERPEKEKTGGEMEEAKPVNSEPDIRRLEESTTNTDKVLPTTGDESDRDNQSVNESNSTGSRFEAAKTGEVDVKVEPGPVPIHSGLKEPDQTVRKKKSVEEESNNGSYDNDNEAKVLTFESVPPSEKRKVEGDSSELHDSVTHSEEGGTRESSEVQSSSSLTKTRKSRQKKEVSGGEVLPENENVVATVKSEPLVEVLEMIKRHEKFSLFERRLEKNQDSDKYKDIVKQHLDLETIHSRLQKGHYSSCANSFFRDLLLLFTNATVFFNHDSPESRAAQQLFRLVVAEMRSCSQAQSEPITQKNDSLPPNPPLSKPDSVLPKHKTAAPIIVCRKRTPISVKPSTTTFSQKGDQSINNDKKERSSSDAKPILKQINSETDEDEPPKTKEKPVTGARSRRSSKSHNSNTGDKKLLSNSTPKTGSSAKKPVETPKLDKNKTEGMSDKKKNAAADFLKRIKRNASAEVMKSGGSGGGGSSGSSKGGGSGANTKDQKKIVSSGKGEKGKERSSRYDDGGGPGSGDKKNKNIEHSSQSRRSVGRPPKKAETSVVKRGRESSASGGKDKRPKKRSKK 724
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01772 724 Gene3D - 300 460 IPR036427 GO:0005515
Vivi4g01772 724 MobiDBLite consensus disorder prediction 508 549 - -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 625 647 - -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 134 188 - -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 582 615 - -
Vivi4g01772 724 CDD Bromodomain 349 443 - -
Vivi4g01772 724 ProSiteProfiles Bromodomain profile. 357 429 IPR001487 GO:0005515
Vivi4g01772 724 PANTHER DNA-BINDING BROMODOMAIN-CONTAINING PROTEIN 10 724 - -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 551 578 - -
Vivi4g01772 724 Coils Coil 122 142 - -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 495 724 - -
Vivi4g01772 724 SUPERFAMILY Bromodomain 345 448 IPR036427 GO:0005515
Vivi4g01772 724 Pfam Myb-like DNA-binding domain 21 53 IPR001005 -
Vivi4g01772 724 SMART bromo_6 342 448 IPR001487 GO:0005515
Vivi4g01772 724 MobiDBLite consensus disorder prediction 277 305 - -
Vivi4g01772 724 Pfam Bromodomain 351 433 IPR001487 GO:0005515
Vivi4g01772 724 Coils Coil 1 21 - -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 691 715 - -
Vivi4g01772 724 CDD SANT 21 53 IPR001005 -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 648 685 - -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 449 480 - -
Vivi4g01772 724 SMART sant 18 75 IPR001005 -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 134 332 - -
Vivi4g01772 724 MobiDBLite consensus disorder prediction 243 259 - -
Vivi4g01772 724 SUPERFAMILY Homeodomain-like 17 54 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01772 Vivi-Chr4 80003266 80007914 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vivi4g01772 Bromodomain 1.2e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01772 - - gmx:100811021 857.44