LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vivi4g01760	ATGGATTACGAACCCTACGATAGTAGCGGAACTGATGATGATCTTCCACCAACACATCAGAATAGAATTCCTAGAGGGGCGCGTCTCGCCGGGAATGGAAGATCTGCAGGAGGTTCAATGTCATACCCCAGGATGTATGGTGAAATTGACATGGAAACTCAAATTCACCAACTTGAGCAGGAAGCGTATAGTTCGGTTTTACGAGCCTTTAAAGCTCAGGCGGATGCCATTACTTGGGAGAAGGAAAGTTTGATAACAGAACTAAGGAAAGAACTAAGATTATCAAATGAGGAGCACAGAGAACTTCTAGGCCGTGTTAATGCCGATGATGTCATACGAAGGATAAGGGAGTGGAGACAGACAGGAGGCCATCAAACTGGTGTGTTGAATTCTGGACAAGTTATTCACGATTCAGCTCCGAGTCCAACAGTCTCTGCATCTCGGAAAAAGCAGAAGATAACATCGTCTGTACCCTCACAATCTTTTGGTGGGCCTTCTCCTTCATTTCACCCCCAACCAGTGGCTGCACCCCACCAACCATCTTCTTCTGTTGGAAAACGCGGTTCTGTTCCGGGACATAAGGGCAAGAAGCAGAAACCTGGCCAAGTATTACCAGGAGGATCTTCTATAAAGCAATACCCTTCATCCGGACCAGGGGGAAGGAATCAAGTACCTAATAGAGTTACTTCTGGTACGGTCGCAGGTGAGCTTGCTGAAGGAGCATCGTTTGATTCTCTCAATGGTAGGAGATTACGGACAAGATGGCCCGATGACAATAATTTCTACGAAGCTGTTATCACCGACTACAATCCAGTCGAACGTCGACACCATCTGGTATATGACATGGGGAGTACAAATGAAACATGGGAATGGGTTAATCTTTCAGAGATCTCTCCAGAAGATATTCAGTGGGTAGGTGAGGATCCTGGGATCAACCGCGGGGGTTTTGGCGGATCTGGTCGTGGGATGAATAATAGGTCAGTAGGTCGCGATAGTATTCCAGGAGCTGGAAGAGGAGGTAGGGGAGGTACAAAAGGGCAATCCAAAAAAGATTTATTGCCATCACAGAATGGAATAGGAAAGAAAGCTTTGGAAGATATACAAATACTTCACACAGACACACTAGTTAAGGAGGTGGAAAGGGTGTTCAGTGCAAATCATCCAGATGCACACGAAATTGAGAAAGCCAAGAAACTATTGAAGAATCATGAGCAAGCTCTTATAGATGCAATTGCAAGACTTGCAGATCTTTCTGATGGTGAAAGTGATGAGGGTGGTCACCATTTCTCGCATGCTAAATCAATGGATCGAGAATGA	1317	0.4548	MDYEPYDSSGTDDDLPPTHQNRIPRGARLAGNGRSAGGSMSYPRMYGEIDMETQIHQLEQEAYSSVLRAFKAQADAITWEKESLITELRKELRLSNEEHRELLGRVNADDVIRRIREWRQTGGHQTGVLNSGQVIHDSAPSPTVSASRKKQKITSSVPSQSFGGPSPSFHPQPVAAPHQPSSSVGKRGSVPGHKGKKQKPGQVLPGGSSIKQYPSSGPGGRNQVPNRVTSGTVAGELAEGASFDSLNGRRLRTRWPDDNNFYEAVITDYNPVERRHHLVYDMGSTNETWEWVNLSEISPEDIQWVGEDPGINRGGFGGSGRGMNNRSVGRDSIPGAGRGGRGGTKGQSKKDLLPSQNGIGKKALEDIQILHTDTLVKEVERVFSANHPDAHEIEKAKKLLKNHEQALIDAIARLADLSDGESDEGGHHFSHAKSMDRE	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vivi4g01760	438	Coils	Coil	85	105	-	-
	Vivi4g01760	438	MobiDBLite	consensus disorder prediction	315	356	-	-
	Vivi4g01760	438	ProSiteProfiles	EMSY N-terminal (ENT) domain profile.	51	138	IPR005491	-
	Vivi4g01760	438	MobiDBLite	consensus disorder prediction	123	167	-	-
	Vivi4g01760	438	MobiDBLite	consensus disorder prediction	208	228	-	-
	Vivi4g01760	438	MobiDBLite	consensus disorder prediction	1	39	-	-
	Vivi4g01760	438	FunFam	Protein EMSY-LIKE 3 isoform A	46	176	-	-
	Vivi4g01760	438	SUPERFAMILY	ENT-like	46	163	IPR036142	-
	Vivi4g01760	438	MobiDBLite	consensus disorder prediction	418	438	-	-
	Vivi4g01760	438	CDD	Tudor_Agenet_AtEML-like	248	297	-	-
	Vivi4g01760	438	Coils	Coil	393	413	-	-
	Vivi4g01760	438	SMART	ENT_2	51	124	IPR005491	-
	Vivi4g01760	438	MobiDBLite	consensus disorder prediction	123	228	-	-
	Vivi4g01760	438	Gene3D	-	244	299	-	-
	Vivi4g01760	438	SUPERFAMILY	Tudor/PWWP/MBT	245	285	-	-
	Vivi4g01760	438	Gene3D	ENT domain	46	160	IPR036142	-
	Vivi4g01760	438	Pfam	ENT domain	53	120	IPR005491	-
	Vivi4g01760	438	PANTHER	PROTEIN EMSY-LIKE 4	11	423	IPR033485	GO:0050832

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vivi4g01760	Vivi-Chr4	79524192	79528926	Dispersed/Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vivi4g01760	-		-	qsa:O6P43_001310	676.396

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Vivi4g01760	4	79524192	79528926	Vivi4g01760	4	79524192	79528926	ECH
	Vivi2g05479	2	180399446	180401125	Vivi4g01760	4	79524192	79528926	PCT