Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01734 ATGCTCTCTTTCTTTAGCAACACAAGTGTTTTTCCTGAAATAGGGGTTCTGTTTAAGATGGGAAGAAGAGGAGGAGTGTGCAAAACATGGGAGGAAGACATTTACTGGACACGCTTTCAATTCATCCGTTTCACACAATTTCTCCGCTCTGATTTTGATCAACAACTTGCACTTCCCAAAACATTTTGTGACAATATAAAGAAGGCCTTGCCAGAAAGTGTTACCCTAAAAGATCCGGGTGGAGTGCTGTGGAATATAGAGGTGACAAGTAGAGACGATACCTTGTACTTGACGCACGGTTGGCAACAATTCGTGAAAGAACACTCTTTGAAAGAAAATGATTTCCTTGTCTTTAAGTACAACGGTGAATCGTTGTTTGAGGTTTTAATCTTTGATGAGAGTTTATGTGAGAAGGCAGCTTGTTATTTTGTTCGAAAATGTCAGCATGCAGTCAATACTGAACAAGGGGGAGGATGTGGTAGCCCGAAAAAGGACTCAGATAATTCTGTTGAAGAAGTTAAGACTCCTTCTAATGCTGTTGATGAAGGTGTTTCACCCGAGAAATCTTTGCATCTTAACAGTATCCGAGTGCCACTTGATGTACCTATTGAAACTACCAATGGCAAGACTTCTAATGTTGGTATTGAATCAGCTTCGGCCGAGCAATTCTTGTCTGATGCAATCACTGATACTGAGCCAAAAACTACTCCGTCCAAAACAACTGGTAAACGAATGAGGAGGCCTGTTTATGCCGATACATCTGTCCCAGGTAAGAAGAGAGGAAGACCACCAAAAACCGATAATTCTGTTGAAGTTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCGGAGAAATCTTTGCATCTTAACAGTATCCAAGTACCACTCGCTGTACCTATCGAAACTACTAATGGCAAGACTTCTAATGCTGGTGTTGGATCAGCTTCCGACGAGCTATTCATGTCTGATGCAGTCACTGATACTGAACCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGAACGAGGAGGCCTGTTTATGCTAATACATCTGTCCCAAGTAAGAAGAGAGGAAGACCACGAAAAACCGATAATTATTTTGAGGAAGTTAACACTCCTAATGGTGTTGATGAAGGTGTTTCACCGGAGAAATCTTTGCATCTTAACAGTATCCAAGTACCACTCACTGTACCTATTGAAACAACTAATGGCAAGACTTCTGTTGAAGAAGTTAAGACTCCTTCTAATGGTGTTGATGAAGGTGTTTCACCTGAGAAATCTTTGCATCCTAACAGTATCCAAGTGCCACTTGATGTACCTATTGAAACTACCAATGGCAAGAGTTCTAATGATGGTGTTGAATCAGCTTCCGACGAGCTATTCATGTCTGATGCAGTCACTGATACTGAACCAAAAACTGTTCCCTCCCAAACAACTGGTAAACGGACGAGGAGGCCACCAAAAACTGTATATGCCGATACGTCTGTCCCTAGTAAGATGAGAGGAAGACCACCAAAAACTGTTTATGCCAATACGTCTGTCCCTAGTAAGAAGAGAGGAAGACCACCAAAAACCACTAAATCTCACGAGAGAGCTCTTAATTCCGTGTCTGGTCCTGAACTTTCTCCCAAGGTTTCTCCAAAGGCCTCTCCAAAGGTTGGATCTGGGAGCAAGCAATTATATACTTCAAATAGAAGGTCTGTCACTAAAAATGAGATTGAAAATACTCTTCAGTTGGCCCAGGCAACATGTGCCGAAGACACCTTGCTTGTAACTATGCGACCTACGCACGTATACAAGAGATTCTTTGTGTCATTCCCTAATAAATGGAGAATAAACCATCTTTCTTCGTCGTCTCAAGATGTGATATTACGCATGGGTAAGAGGGAATGGCTTGGGAAATACCTCTATCATAATATTCGTAGCAATGGAGGAATTACCGGTGGGTGGAAACATTTTGCTCTCGAAAATAACCTTGAAGAGTTCGATGTGTGTTTGTTTAAGCCCGCTGGTCATATGGGCAAAACGTTGATCTTAGAAATGACCATTTTTAGAGTTGTAGAGGAGATTACTCCTCTTACTGCGGTGAACTCTCCGGGAAAGAAGAAGTCTATTCAGAAAACACCAACCGGGGTGAATTCTCCAGGAAAGAAGAAGTCAGTTAAGAAAACACCAACTGGGGTGAATGTGAATTCTCCGGGAAAGAAGAGGTCAGTTAAGAAAACACCAGCAGGTGCTGTCCAAGCAGAACTAGAGTCCTTTGAACCACTAGAAAAGAAGAGGGGAGTTAACATAACACCGACTAGTGCAGTCCAAACAGAACTTGACTCCATTGAAGGTGCGTAG 2349 0.4215 MLSFFSNTSVFPEIGVLFKMGRRGGVCKTWEEDIYWTRFQFIRFTQFLRSDFDQQLALPKTFCDNIKKALPESVTLKDPGGVLWNIEVTSRDDTLYLTHGWQQFVKEHSLKENDFLVFKYNGESLFEVLIFDESLCEKAACYFVRKCQHAVNTEQGGGCGSPKKDSDNSVEEVKTPSNAVDEGVSPEKSLHLNSIRVPLDVPIETTNGKTSNVGIESASAEQFLSDAITDTEPKTTPSKTTGKRMRRPVYADTSVPGKKRGRPPKTDNSVEVNTPNGVDEGVSPEKSLHLNSIQVPLAVPIETTNGKTSNAGVGSASDELFMSDAVTDTEPKTVPSQTTGKRTRRPVYANTSVPSKKRGRPRKTDNYFEEVNTPNGVDEGVSPEKSLHLNSIQVPLTVPIETTNGKTSVEEVKTPSNGVDEGVSPEKSLHPNSIQVPLDVPIETTNGKSSNDGVESASDELFMSDAVTDTEPKTVPSQTTGKRTRRPPKTVYADTSVPSKMRGRPPKTVYANTSVPSKKRGRPPKTTKSHERALNSVSGPELSPKVSPKASPKVGSGSKQLYTSNRRSVTKNEIENTLQLAQATCAEDTLLVTMRPTHVYKRFFVSFPNKWRINHLSSSSQDVILRMGKREWLGKYLYHNIRSNGGITGGWKHFALENNLEEFDVCLFKPAGHMGKTLILEMTIFRVVEEITPLTAVNSPGKKKSIQKTPTGVNSPGKKKSVKKTPTGVNVNSPGKKRSVKKTPAGAVQAELESFEPLEKKRGVNITPTSAVQTELDSIEGA 782
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01734 782 CDD B3_DNA 44 132 IPR003340 GO:0003677
Vivi4g01734 782 MobiDBLite consensus disorder prediction 698 737 - -
Vivi4g01734 782 ProSiteProfiles B3 DNA-binding domain profile. 590 688 IPR003340 GO:0003677
Vivi4g01734 782 SMART B3_2 44 134 IPR003340 GO:0003677
Vivi4g01734 782 SMART B3_2 590 688 IPR003340 GO:0003677
Vivi4g01734 782 MobiDBLite consensus disorder prediction 470 485 - -
Vivi4g01734 782 MobiDBLite consensus disorder prediction 402 560 - -
Vivi4g01734 782 Pfam AT hook motif 356 365 IPR017956 GO:0003677
Vivi4g01734 782 Pfam AT hook motif 501 508 IPR017956 GO:0003677
Vivi4g01734 782 Pfam AT hook motif 518 528 IPR017956 GO:0003677
Vivi4g01734 782 Pfam AT hook motif 257 268 IPR017956 GO:0003677
Vivi4g01734 782 Gene3D - 38 136 IPR015300 -
Vivi4g01734 782 PRINTS AT-hook-like domain signature 355 365 IPR017956 GO:0003677
Vivi4g01734 782 PRINTS AT-hook-like domain signature 515 525 IPR017956 GO:0003677
Vivi4g01734 782 PRINTS AT-hook-like domain signature 497 508 IPR017956 GO:0003677
Vivi4g01734 782 MobiDBLite consensus disorder prediction 224 284 - -
Vivi4g01734 782 CDD B3_DNA 593 686 IPR003340 GO:0003677
Vivi4g01734 782 ProSiteProfiles B3 DNA-binding domain profile. 41 134 IPR003340 GO:0003677
Vivi4g01734 782 MobiDBLite consensus disorder prediction 224 238 - -
Vivi4g01734 782 SUPERFAMILY DNA-binding pseudobarrel domain 591 678 IPR015300 -
Vivi4g01734 782 MobiDBLite consensus disorder prediction 154 186 - -
Vivi4g01734 782 Pfam B3 DNA binding domain 54 133 IPR003340 GO:0003677
Vivi4g01734 782 Pfam B3 DNA binding domain 592 680 IPR003340 GO:0003677
Vivi4g01734 782 MobiDBLite consensus disorder prediction 329 350 - -
Vivi4g01734 782 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 49 691 IPR044837 -
Vivi4g01734 782 MobiDBLite consensus disorder prediction 323 382 - -
Vivi4g01734 782 Gene3D - 568 690 IPR015300 -
Vivi4g01734 782 MobiDBLite consensus disorder prediction 698 782 - -
Vivi4g01734 782 SUPERFAMILY DNA-binding pseudobarrel domain 43 136 IPR015300 -
Vivi4g01734 782 MobiDBLite consensus disorder prediction 438 457 - -
Vivi4g01734 782 SMART AT_hook_2 257 269 IPR017956 GO:0003677
Vivi4g01734 782 SMART AT_hook_2 499 511 IPR017956 GO:0003677
Vivi4g01734 782 SMART AT_hook_2 355 367 IPR017956 GO:0003677
Vivi4g01734 782 SMART AT_hook_2 517 529 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01734 Vivi-Chr4 76775566 76779793 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01734 544 686 REM Transcription Factor Family AT4G33280 30.818 5.81e-20 91.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vivi4g01734 B3 2e-08 CL0405