Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01716 ATGAAGATTCGCTCAGTGAAAATGAGGGAGGCCCACACTCAAAAGGGCGGCGGCGTTTCCTTCTGCTCCGTCGTATGGGACCAGAAAGCCGAACATCTCGTCACCGCCTCCTCTTCCGACGTATCTCTCTCCATTCACAACCCTCTTCTTCCCTCCGCCGCACCTAAGATTCTCCGTCACCACCGCGACGGTGTCACTGCTCTGGCTCTTAGCCCTAATTCCACTTGCCTTGCTTCTGGATCTGTCGACCATTCCGTTAAGCTCTACAAGTTCCCTGGTGGAGAATTTGAGACAAATATTACACGGTTCACACTTCCTATACGTTCCTTAGCATTCAACAAGAAAGGAAGCATGTTAGCAGCTGCAGGTGATGATGAGGGAATCAAGCTCATAAACACAGTTGATGGTTCCATTGCAAGGGTTCTCAAGGGGCATAAAGGACCTGTCACAGGTGTAGCTTTCGACCCCAATGGTGAATATTTAGCATCTTTGGATTCGAATGGTACTGTTATCATCTGGGAGCTTCACTCCGGAAGAAACCTTCACAACCTCAAAGGCATAGCTCCTGATATTGGGTTAGATGTTTCAACCATGAATGTTCTTTGTTGGAGTCCTGATGGTGAGACCTTAGCCGTTCCCGGCTTGAGAAATGATGTTGTGATGTATGATAGGGACACAGCTGAGAAGTTGTTCACTTTGAGAGGGGATCATAATCAGCCTATTTGTTTTTTGTGTTGGTCCCCCAATGGCAAGTATATGGCTACCTCTGGTTTAGATAAGCAGATTCTGATATGGGATGTTGATAGGAAGCAGGATATTGACAGGACGAAGTTTGATGAAAGAGTGAGTTGCATGGCATGGAGGCCGATTGGGAATGCATTGGCTGTTATTGATGTTAAGGGAAAGTACGGTATATGGGACAATGTTATCCCTTCATCTATGAAGTCTCCAACTGAGGATATACCTTTGCAGGGAAAGAACAGTAATGGATTTCTTTTGTTTGACGATGAGGATCAGGACAATAGTGTCAGTGGGAGCTTAAGTGATCTTGGTGAAAATAGTAATGGTGAGTTTGAGCCACCAACTAGCAGGAAAAGATTGCGCAAACATTCCTTGAGTGAGGAAAATTTGGATGAGTATGAAGAAGAAGGAATTGATCTATATCCAAAGGCCGAATCTCACAAGAAAAGGAACCGTTCCGTCAAGGAAAATTTGGATAATGGTAATGTAGTATTTAGAAGCCCAATGGTAACATCTAAGGCAACAATGCAGGAGGCATTTCAATCAGGAGCTACTCCAGTGCAGCCTGGGAAAAAGCGCTTCTTATGCTACAGTATGCTTGGAAGTATAACCACTGTCGATTATGATGGATACTCTCATATTGAGATTGATTTTCATGATACTGGAAGCAGTCCTCGAGTTCCATCAATGACTGACCATTTTGGATTCACAATGGCTGCATTGAATGAGAATGGAAGTGTCCTTGCAAATCCTTGCAAGGGGGAGAAAAACATGAGCACCCTCATGTATCGCCCATTTAGTACTTGGGCTAGTAATAGTGAGTGGTCCATGCGCTTTGAAGGTGAAGAAGTAAAGGCTGTTGCACTAGGTGCTTCTTGGGTGGCCGCAGTAACTAGTTTTAACTATCTTCGTATCTTTACAGAGGGTGGTATGCAGAGACATGTTATTTCGCTAGATGGGCCAGTGGTGACTGCATCAGGTTTCAAGGATAATCTGGCACTTGTCACTCATGCTTCTGATTGCCTTTCTTCAAATGATCAGGTGCTAGAGTTTAGGTTATTCAATATACCACTTGGGACCCAACCCCTTCGAGGTCGCTTGCCAATAACTCCTGGTTCCTCTCTTTGTTGGTTTGGATTTAGTGAGGAGGGCCAATTGTGTTCTTACGATTCTAAGGGTGTGCTAAGATTACATACAAGCCAATTTGGTGGTAGCTGGTTCCCAGTTTTCAGCGCTGTTAAAGAGAAGAAGTCAGATGAAAACTATTGGATGGTTGGTTTGAATTCAAACAAGTTAGTTTGTGTTGTATGCAAAAAGCCTGAATCCTTCCCACAGGTGATGCCTAAGCCAATTCTCACTTTAAAGGATCTTTCATTTCCACTTGCTACCTCTGATTTGGGATCTGAGGCCCTTGAAAACGAGTTTATGATGAACAACATGCATCTCTTTGAGATTCAGAAAAAAATGGATGAAATGGATAATGCGGGTTTGGATGTTAGTTTACTTGATGATGAAGCTTTCAATTTGGAAGCAGCACAAGATAGATGCATACTAAGGCTTATAGCATCCTGCTGCAATAGTGATAAACTTGTGAGAGCCACTGAACTTGTGAAGCTTTTGTCACTAGAGAAATCAATGAAAGGAGCAATAAAACTTGTTACTGCTCTTAAGCTTCCGAATTTGGCAGAAAAATTCAGCAGCATAATAGAGGAAAGGCTACTTGGTGAAGTTAAAAAGACTACAGAAACCAGCCATAAGGAAAACAATTCTGCACCCATTACATCTGATTCTCTACCTAGCGGAAGCAAGGCCTCAATGCTGACCGAAACATCAAAAGCATATACTGTTTCATCATCAAAATTATCTACACTTTCGTTCATAAAGAAAAATAAAACACAAGACTCGACTACAGATGGAATGAATAAAACTGCAATGGTGAATGAAAGTACGAATGTAAAGCAGATAGGAGGAGGTGAAACAAGTGATAAGGGTAAGGAGGAAATGCAAGCTCCTCCTCAATCACATGGTACTAATATAAAGTCAGATCCTGGTTTGGTGACAGCAAAAAGAGGGTCCAATCCATTTTTGAAGGCCTCTGTCAAATGA 2847 0.4278 MKIRSVKMREAHTQKGGGVSFCSVVWDQKAEHLVTASSSDVSLSIHNPLLPSAAPKILRHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFETNITRFTLPIRSLAFNKKGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGPVTGVAFDPNGEYLASLDSNGTVIIWELHSGRNLHNLKGIAPDIGLDVSTMNVLCWSPDGETLAVPGLRNDVVMYDRDTAEKLFTLRGDHNQPICFLCWSPNGKYMATSGLDKQILIWDVDRKQDIDRTKFDERVSCMAWRPIGNALAVIDVKGKYGIWDNVIPSSMKSPTEDIPLQGKNSNGFLLFDDEDQDNSVSGSLSDLGENSNGEFEPPTSRKRLRKHSLSEENLDEYEEEGIDLYPKAESHKKRNRSVKENLDNGNVVFRSPMVTSKATMQEAFQSGATPVQPGKKRFLCYSMLGSITTVDYDGYSHIEIDFHDTGSSPRVPSMTDHFGFTMAALNENGSVLANPCKGEKNMSTLMYRPFSTWASNSEWSMRFEGEEVKAVALGASWVAAVTSFNYLRIFTEGGMQRHVISLDGPVVTASGFKDNLALVTHASDCLSSNDQVLEFRLFNIPLGTQPLRGRLPITPGSSLCWFGFSEEGQLCSYDSKGVLRLHTSQFGGSWFPVFSAVKEKKSDENYWMVGLNSNKLVCVVCKKPESFPQVMPKPILTLKDLSFPLATSDLGSEALENEFMMNNMHLFEIQKKMDEMDNAGLDVSLLDDEAFNLEAAQDRCILRLIASCCNSDKLVRATELVKLLSLEKSMKGAIKLVTALKLPNLAEKFSSIIEERLLGEVKKTTETSHKENNSAPITSDSLPSGSKASMLTETSKAYTVSSSKLSTLSFIKKNKTQDSTTDGMNKTAMVNESTNVKQIGGGETSDKGKEEMQAPPQSHGTNIKSDPGLVTAKRGSNPFLKASVK 948
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01716 948 MobiDBLite consensus disorder prediction 341 371 - -
Vivi4g01716 948 ProSitePatterns Trp-Asp (WD) repeats signature. 161 175 IPR019775 -
Vivi4g01716 948 MobiDBLite consensus disorder prediction 878 904 - -
Vivi4g01716 948 SMART WD40_4 93 132 IPR001680 GO:0005515
Vivi4g01716 948 SMART WD40_4 226 266 IPR001680 GO:0005515
Vivi4g01716 948 SMART WD40_4 135 174 IPR001680 GO:0005515
Vivi4g01716 948 SMART WD40_4 2 47 IPR001680 GO:0005515
Vivi4g01716 948 SMART WD40_4 268 307 IPR001680 GO:0005515
Vivi4g01716 948 SMART WD40_4 51 90 IPR001680 GO:0005515
Vivi4g01716 948 MobiDBLite consensus disorder prediction 827 851 - -
Vivi4g01716 948 MobiDBLite consensus disorder prediction 833 851 - -
Vivi4g01716 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 58 90 - -
Vivi4g01716 948 MobiDBLite consensus disorder prediction 341 358 - -
Vivi4g01716 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 58 99 IPR001680 GO:0005515
Vivi4g01716 948 CDD WD40 22 310 - -
Vivi4g01716 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 234 275 IPR001680 GO:0005515
Vivi4g01716 948 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 918 - -
Vivi4g01716 948 FunFam Transducin family protein / WD-40 repeat family protein 195 322 - -
Vivi4g01716 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 234 268 - -
Vivi4g01716 948 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 142 179 - -
Vivi4g01716 948 ProSiteProfiles Trp-Asp (WD) repeats profile. 142 183 IPR001680 GO:0005515
Vivi4g01716 948 Pfam Minichromosome loss protein, Mcl1, middle region 426 708 IPR022100 -
Vivi4g01716 948 MobiDBLite consensus disorder prediction 878 948 - -
Vivi4g01716 948 Pfam Anaphase-promoting complex subunit 4 WD40 domain 201 288 IPR024977 -
Vivi4g01716 948 Pfam WD domain, G-beta repeat 57 89 IPR001680 GO:0005515
Vivi4g01716 948 Pfam WD domain, G-beta repeat 140 173 IPR001680 GO:0005515
Vivi4g01716 948 SUPERFAMILY WD40 repeat-like 12 307 IPR036322 GO:0005515
Vivi4g01716 948 Gene3D - 2 190 IPR015943 GO:0005515
Vivi4g01716 948 ProSitePatterns Trp-Asp (WD) repeats signature. 253 267 IPR019775 -
Vivi4g01716 948 Gene3D - 191 321 IPR015943 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01716 59 296 U-box Gene Family AT2G33340 20.332 1.80e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01716 K11274 - gmx:100809300 1416.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi4g01716 4 75070973 75075884 Vivi4g01716 4 75070973 75075884 ECH