Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01683 ATGAACAATATTCACTTTGGAAATGAAAGAGAGCAAATTCAGAAGAAGAGGAAATCGTATGATGAAGCCACTACCAACATGAAAACTTCAAAGAGAAGATTATGCAACAACAATAACAATGAAGAAGAGAAAAACAACAAGGGATCAGTTTCGACAACACTTAAGCTTTACGATGATCCATGGAAGATAAAGAAGACACTAACAGACAGTGATCTAGGAATCTTGAGCAGACTCTTGTTGGCTGCAGATTTAGTGAAGAAACAAATTTTGCCTATGTTGGAGGTTGATGAAGCAAGAGCTGCAGAAAGCGAGGAAGGTTCCCCGGTTCATGTTTGCGACATGGAAACAAACACCATGCACGAACTCGTTCTAAAGCGATGGTCTTCGTCCAAGAGTTATGTTCTTATTGGAAAGTGGAATCAAGATTTTGTGAGAAGAAGAGAACTTAAGAAAGGAGATGAGATTGGATTTCAATGGGATCCTTTTAAACGCACCTTCAATTTCTGTGTTCTTAAAAGGGCTATGCCCATGCCATAA 537 0.3892 MNNIHFGNEREQIQKKRKSYDEATTNMKTSKRRLCNNNNNEEEKNNKGSVSTTLKLYDDPWKIKKTLTDSDLGILSRLLLAADLVKKQILPMLEVDEARAAESEEGSPVHVCDMETNTMHELVLKRWSSSKSYVLIGKWNQDFVRRRELKKGDEIGFQWDPFKRTFNFCVLKRAMPMP 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01683 178 SUPERFAMILY DNA-binding pseudobarrel domain 59 173 IPR015300 -
Vivi4g01683 178 Gene3D - 60 174 IPR015300 -
Vivi4g01683 178 CDD B3_DNA 61 172 IPR003340 GO:0003677
Vivi4g01683 178 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 31 173 - -
Vivi4g01683 178 MobiDBLite consensus disorder prediction 9 24 - -
Vivi4g01683 178 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01683 Vivi-Chr4 71368285 71368821 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01683 63 157 RAV Transcription Factor Family AT1G50680 33.010 3.97e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01683 - - pvu:PHAVU_009G204600g 253.832