Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01651 ATGGAACCCATGGACATAGTTGCAAAATCAAAGGAAGATGCTTCGCTTCCTAAAGCCACCATGACTAAAATTATTAAAGAGATGTTACCACCAGATGTGCGTGTTGCAAGAGATACCCAGGATTTGTTGATTGAATGCTGTGTAGAGTTCATAAACCTTATCTCATCAGAGTCAAATGAAGTATGTAACAGAGAGGAAAGAAGGACGATTGCTCCTGAGCACGTATTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAAATGGAGACAGTGCAGGACTCTATAAAAGGTGCCAAGTGGAGCGGTGCAGCTGAGATGACAGAGGAACAGGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGGACCATAACTTCAAATCAACCTGATGCTGACCAAAGTTTAGAGAACTAA 471 0.4289 MEPMDIVAKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKMETVQDSIKGAKWSGAAEMTEEQALAEQQRMFAEARARMNGGTITSNQPDADQSLEN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01651 156 Coils Coil 115 135 - -
Vivi4g01651 156 Gene3D Histone, subunit A 4 142 IPR009072 GO:0046982
Vivi4g01651 156 PANTHER PROTEIN DR1 HOMOLOG 1 155 IPR044255 -
Vivi4g01651 156 FunFam Negative cofactor 2 beta 6 142 - -
Vivi4g01651 156 SUPERFAMILY Histone-fold 12 143 IPR009072 GO:0046982
Vivi4g01651 156 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01651 Vivi-Chr4 68644945 68648195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01651 1 152 CCAAT-DR1 Transcription Factor Family AT5G23090 79.221 1.26e-89 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi4g01651 CBFD_NFYB_HMF 2.5e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01651 K21751 - gmx:547635 283.493