Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01650 ATGGAACCCATGGACATAGTTGCAAAATCAAAGGAAGATGCTTCGCTTCCTAAAGCCACCATGACTAAAATTATTAAAGAGATGTTACCACCAGATGTGCGTGTTGCAAGAGATACCCAGGATTTGTTGATTGAATGCTGTGTAGAGTTCATAAACCTTATCTCATCAGAGTCAAATGAAGTATGTAACAGAGAGGAAAGAAGGACGATTGCTCCTGAGCACGTATTGAAGGCTTTAGGGGTTCTTGGATTTGGCGAGTACATTGAGGAAGTTTATGCAGCATATGAACAACACAAAATGGAGACAGTGGACTCTATAAAAGGTGCCAAGTGGAGCGGTGCAGCTGAGATGACAGAGGAACAGGCATTAGCAGAGCAGCAAAGGATGTTTGCAGAGGCACGTGCTAGAATGAATGGAGGGACCATAACTTCAAATCAACCTGATGCTGACCAAAGTTTAGAGAACTAA 468 0.4274 MEPMDIVAKSKEDASLPKATMTKIIKEMLPPDVRVARDTQDLLIECCVEFINLISSESNEVCNREERRTIAPEHVLKALGVLGFGEYIEEVYAAYEQHKMETVDSIKGAKWSGAAEMTEEQALAEQQRMFAEARARMNGGTITSNQPDADQSLEN 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01650 155 Gene3D Histone, subunit A 4 141 IPR009072 GO:0046982
Vivi4g01650 155 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 14 79 IPR003958 -
Vivi4g01650 155 Coils Coil 114 134 - -
Vivi4g01650 155 FunFam Negative cofactor 2 beta 6 141 - -
Vivi4g01650 155 SUPERFAMILY Histone-fold 12 142 IPR009072 GO:0046982
Vivi4g01650 155 PANTHER PROTEIN DR1 HOMOLOG 1 154 IPR044255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01650 Vivi-Chr4 68644937 68648195 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01650 1 151 CCAAT-DR1 Transcription Factor Family AT5G23090 78.571 5.07e-87 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Vivi4g01650 CBFD_NFYB_HMF 2.4e-21 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01650 K21751 - gmx:547635 276.944