Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01646 ATGTCTAGGGCTCCCATTCTCATTAAGGAGCTGGTCCAAGGGAACCAGGTGTGGAAAATGCACATCAGGGTCGTTGACCTGTGGGTTGTTACAGAAAAAACAGGGTATCAACACCTAGAGTGTGTTCTACAAGATGGAACGGGTGACCAAATCCATGTGACCACTAGCCGTTGGGATTTTAAAGATTGGATAGAGCAGATCAAAGAGCACGAAACTTATTATTTGTATAATGGGGAGCCTGTGGCTAATGATGGCCCTTTGAAAGTATGTTCGAACCCTCTCAAGATTCTTTTTAATGGAGGCACTACTCTCACCAAGGTGGACATGCCGGACATCCCACCACACAAATTCAACTTCCATGCCATTGAAAACTTTCTCAATGGACATTTCAAGCCTGATATGCTCTATGATGTTATTGGTGTCTTGCAAGATGTTGTTAAGACACAAATGGGGGGTGGGGGTAAGAAGTCCTGTACCAATATCACATTACGTGACGTTGTGGGAAATGCCATTGAAGTTGCTTTATGGGGTGATTTTAGCAAACAATTCATGGACTACAAGACTCTTGGCAAACATGTTGGTCCCACAATTATCATTTTGACTCATGCTTGGTGTAAGCCCAATACAGTATCTGGATTACCAAGTCTATCTAATGCTTGGAATGGCTCGAAACTCCTGATTAACTTAGACCATCCACAAGTGGAAACCTTCAAAACCAGTTTTGGAGCAGCTGATTTGTCAAATGCATCCAACCTTTCTCTATCACTAACTTGTGATTCATCCATTCAATCCACAAACCAGAATTGGACTAGCCGTAATGAGGTCAGGACTATCCGTGACATTTATGAAGGAGAAAAGGATTGTTTTGCAACTACTATTGGAACTACCAAACGATTCAAGGCTTCAAGGTTTGGATGGTTTTTTGAGAGCTGCCCAGGATGTAAGATTTCTATCAAGTCCGATGGAGGGAAAGTTGAGTGCCACTGTGGAGTTAAAGATGTTGAACCAATTACTAAATTCAAAATAGAAGTTGAAGTTGAATATGATGGCTTTAATGGAACCTTTGTCTTTTGGGATAAGGATTGTGTCCCATATACTAAACTGTCTGCTAAAGAGTTAAGAAAGCTCATGATAGCGAATGGAGAAGACAACCCAAAAATATGGCCGGCTCAAGTTGACAATTTGTTGAATAAGGAAATGGCGTTCCGTATCAAATTTCAATCATCTTACAAACAGTATTCAATTGTGACAATTCTTAATGAGGATAATGTTTACAACAAACTTAAGGGATACCTAACCCCGGATGAGGAGCATACATCAAATGCTCCTGTTTTGGAGATCTCCAATTCTGATCCAAATCATGAGCCAACTGAACCTATTATGACACTATCTGCTCAAGCTTCGATATCTCCTCAACCTTCGTCTGCAAGCTCCGGCATCACACCTGCCAAGAGGGGAGCTATTTCAACATCAGTTAATGAGTTGATTGATGCTGAAGATCTGACTCCTAAACAATCTGCTACTAAGGCTAAGACTGCAAGAAAGATCAAGCATATCAAGAAGGAGTAA 1569 0.4111 MSRAPILIKELVQGNQVWKMHIRVVDLWVVTEKTGYQHLECVLQDGTGDQIHVTTSRWDFKDWIEQIKEHETYYLYNGEPVANDGPLKVCSNPLKILFNGGTTLTKVDMPDIPPHKFNFHAIENFLNGHFKPDMLYDVIGVLQDVVKTQMGGGGKKSCTNITLRDVVGNAIEVALWGDFSKQFMDYKTLGKHVGPTIIILTHAWCKPNTVSGLPSLSNAWNGSKLLINLDHPQVETFKTSFGAADLSNASNLSLSLTCDSSIQSTNQNWTSRNEVRTIRDIYEGEKDCFATTIGTTKRFKASRFGWFFESCPGCKISIKSDGGKVECHCGVKDVEPITKFKIEVEVEYDGFNGTFVFWDKDCVPYTKLSAKELRKLMIANGEDNPKIWPAQVDNLLNKEMAFRIKFQSSYKQYSIVTILNEDNVYNKLKGYLTPDEEHTSNAPVLEISNSDPNHEPTEPIMTLSAQASISPQPSSASSGITPAKRGAISTSVNELIDAEDLTPKQSATKAKTARKIKHIKKE 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01646 522 PANTHER OS03G0429900 PROTEIN 5 511 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vivi4g01646 522 SUPERFAMILY Nucleic acid-binding proteins 117 242 IPR012340 -
Vivi4g01646 522 MobiDBLite consensus disorder prediction 467 486 - -
Vivi4g01646 522 MobiDBLite consensus disorder prediction 436 458 - -
Vivi4g01646 522 Gene3D - 110 249 IPR012340 -
Vivi4g01646 522 MobiDBLite consensus disorder prediction 503 522 - -
Vivi4g01646 522 SUPERFAMILY Nucleic acid-binding proteins 7 107 IPR012340 -
Vivi4g01646 522 CDD RPA1_DBD_B_like 137 241 - -
Vivi4g01646 522 SUPERFAMILY Nucleic acid-binding proteins 274 418 IPR012340 -
Vivi4g01646 522 Gene3D - 257 431 IPR012340 -
Vivi4g01646 522 Gene3D - 6 108 IPR012340 -
Vivi4g01646 522 MobiDBLite consensus disorder prediction 442 458 - -
Vivi4g01646 522 CDD RPA1_DBD_A_like 19 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01646 Vivi-Chr4 68183956 68186311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01646 18 346 Core DNA Replication Machinery Family AT5G08020 24.302 3.14e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01646 - - vvo:131597380 1029.62