Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01610 ATGGAAGACAGAAAAGTGAAAATAATTGTTGCTTCATCTGTGATTACAGTTATCATTATCATAATCATTGCTCATTTTTTGTTCGTCTCCAAGATTTTCTTCCTAATATGTGGCGCTGGTGTTGCTGTGATCTTTACAATCTTTGCTTTTGCATTTATCAGCTTAAGCCACAAACGCAGAAGAAGAGTATTGGAATCACAGTTGAAATCAGAAAGTCGAGAGCTTCGAATAGAGTACAGTTTCTTAAGAAAAGTTGCTGGGGTTCCAACAAAATTCAGATACAATGAACTTGAAGAAGCAACAGATGGGTTTCAATCGCTTATTGGAAGAGGTTCATCGGCTTCAGTTTTCAAAGGAATTCTCAATGATGGAACTTCAGTTGCTGTGAAAAGAATTGATGCAGAAGAAAGAGGTGAAAGAGAGTTTAAATCAGAAGTTGCAGCAATAGCTAGTGTTCATCATGTGAATCTTGTGAGACTTTTTGGATATTGCAATTCTTCTTCAGCTCCTAGGTACCTTGTTTATGATTTTATTTCAAATGGGTCATTGGATTGTTGGATTTTTCCTAAAAGGGAATCTCAAAGGCGTCCGCGTCGCAGTGGGTGTTTGTCGTGGAAGCTGAGGTATAAAGTTGCAATTGATGTTGCTAAAGGACTTGCATATCTTCACCACGATTGTAGATCAAGGATCTTACACCTTGATATAAAGCCAGAAAATATACTATTGGATGAGAGTTTTAGAGCACTTGTTTCCGATTTCGGTCTATCAAAACTTACTCCTAAAGATGAAAGCCAAGCGATGTCTACAATAAGAGGAACAAGAGGTTACATGGCTCCTGAATGGCTTTTAGAAAAAGGTATTTCAGATAAAACAGACGTATATAGTTATGGAATGGTTTTACTAGAGATTGTTGGAGGAAGAAAAAATGTTATTCTAGTTGAAGATGAGAAGGACAAGTCAAAAAGGAAATGGCAATATTTTCCAAAGATTGTAAATGAGAAAGTGAAACAAGGGAAAATAATGGAAATTGTTGATGATAGGTTAATGGAATGTGATGAGAATGAGGTTATTAAATTGGTGTATATTGCTTTATGGTGTGTTCAAGAGAAGCCAAGGTTTAGACCTAGTATGGCTAAAGTGGTAGATATGCTTGAAGGCAGTGTCATGGTGGATGAACCACCTGCTACAAAAATGAATCTGGTTGATTTTCTATGTGTTGATGATGATGATAATGTTACAGATAGTAATATTAACATGCCAAAGATGGACTCAATTATGTCTATACAAAGCAATATGGAATGTAATTCTACCTACTCATTTTCCACTACTGTTTTTTCTGGAAGATAG 1347 0.3601 MEDRKVKIIVASSVITVIIIIIIAHFLFVSKIFFLICGAGVAVIFTIFAFAFISLSHKRRRRVLESQLKSESRELRIEYSFLRKVAGVPTKFRYNELEEATDGFQSLIGRGSSASVFKGILNDGTSVAVKRIDAEERGEREFKSEVAAIASVHHVNLVRLFGYCNSSSAPRYLVYDFISNGSLDCWIFPKRESQRRPRRSGCLSWKLRYKVAIDVAKGLAYLHHDCRSRILHLDIKPENILLDESFRALVSDFGLSKLTPKDESQAMSTIRGTRGYMAPEWLLEKGISDKTDVYSYGMVLLEIVGGRKNVILVEDEKDKSKRKWQYFPKIVNEKVKQGKIMEIVDDRLMECDENEVIKLVYIALWCVQEKPRFRPSMAKVVDMLEGSVMVDEPPATKMNLVDFLCVDDDDNVTDSNINMPKMDSIMSIQSNMECNSTYSFSTTVFSGR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01610 448 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Vivi4g01610 448 FunFam Putative receptor-like protein kinase 178 392 - -
Vivi4g01610 448 ProSitePatterns Protein kinases ATP-binding region signature. 108 130 IPR017441 GO:0005524
Vivi4g01610 448 ProSiteProfiles Protein kinase domain profile. 102 390 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01610 448 SUPERFAMILY Protein kinase-like (PK-like) 84 385 IPR011009 -
Vivi4g01610 448 Gene3D Transferase(Phosphotransferase) domain 1 178 397 - -
Vivi4g01610 448 Pfam Protein kinase domain 106 382 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01610 448 SMART serkin_6 102 384 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vivi4g01610 448 FunFam Putative receptor-like protein kinase 69 177 - -
Vivi4g01610 448 Gene3D Phosphorylase Kinase; domain 1 64 177 - -
Vivi4g01610 448 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 17 395 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01610 Vivi-Chr4 65484353 65486024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01610 1 394 Receptor kinase-like Gene Family AT5G20050 61.500 8.68e-167 475
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vivi4g01610 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01610 - - gmx:100791152 626.32