Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01566 ATGGGTGGTGAGGGTAGAGTTGATATTGTGAGTGGTAAAGGGTGTTCAAGGTTGTTTTCGTCTTCGTTTACTTCAATCAGAGGTCTTCCGCCATTGGATCAAATGTCTCCTGTTTCATCTTCTCCGCAAGTGTCATCGACTGCTCCTTTTGCTGGTCTTGTTATATGCGTAACTGGCTTATCTAAAGAAGCAAGGAATCAGGTCAAGGAGGCTACAGAGAGATTAGGTGGCCTGTATAGCCCCAATCTGCATCCTCAATGTACTCATTTGGTGGTTCAGAACTTTGGTGGATGCAAATTTGAGCATGCACTGAAGCATGGAGCAAAAAATGGTCTCTTTGTTGTCACACTGGGTTGGTTTGTAGATAGCGTCAAGAAAAATGTAAGGTTGACTGAATCACTTTATAGTCTGAAGAGCTACGGAGATAACAATATGATCTTGGATGATTTTAGATTGCCTCGAGGGTATACAAATACTGGAAATTGTCTTCCTGCAAGAATCCATGAAACAAAGCATTCTCATCGTGCTGAAGAATATCTAAGATTCTCTGATAAAGAAGAGTCTAACAGAAATTTAGACTCAACTTTGTCTGGTTGCTCCATCTATGTTGATCCACACATTTCATCCGAATTGCGGAACAAGGTTGTCGAGTCTGCCTCAAGAGAAGGTGCTAGTTTGGTGGAACAATGGTTTGTTGGTTGCAATGTTAGTCATGTAGTGACTGAAGGGACATCCATTCAAAGATATCTTGGATACTCTAGTAACCTCATTACACCACTGTGGATTCTCAAAACAGCTAAGGAGAAACAAGTGCAAAGGCTTGTTAACATGTCTGTTGATTTAGCTAGACAAGTTGGCTTGATGCTCGAGGACGTTCATAATGGCCTTTCAGAGAAGGAAGTAGTAAAGCAACAAGTCCATGACGATCATCTAGGCAGTAAAAGTGATGTTAGTTACGAAGAAAGACAACAAATTGTAAATTCGGCAAAAAATGGTGTTAGAAGTCGCCGTGGTCGGCGAATGCAGACATGTCAGACCCCGATCCGGCCGATAACACCGAACAACCTTCTGGACTCTATCTGTTGGTCAATATCAGAGGCAACTTCATCTGCTACTATTTATACAGACTCTTTCAGCGCTGAAGATCCTAATGATAATCATACTTCAATATTTTTTGATGCAAAAGGGGATGCAAAGGATTCAGACGCATCATTTTCAAACTCCACACGTCCTCTAACAGAAAGTGAGAAATCTGAGTTGGTATTTAAAAATCATTTTCTCACCATACTCTTCCCAGTCGACTGGTTTTCCGAGATCGGCCCTTCCTCAAGAATATTTTTCAACAATAACGGTTTTACATGTCTTCAAGTGTTGGATCATATACATGCATTTTATCAGGAGAACATGTCAAGCCATGAAATAGAAGTGGCGATTCATACAGATTCAAGACACGCGGATAAGCTTCGATCCGTGTACTCAAGTAAGGAAACAGCAGAGCGTGGATATGCGATGTTCAAACGAACTGAGTTTTTGGGAAGCCGTACAAGTTTTGAAATGTTGAAGCGCGTAAGTGGAGACAACAACTCCAATGTGTATGAGTTATTACTTAGGGCGTAA 1617 0.4125 MGGEGRVDIVSGKGCSRLFSSSFTSIRGLPPLDQMSPVSSSPQVSSTAPFAGLVICVTGLSKEARNQVKEATERLGGLYSPNLHPQCTHLVVQNFGGCKFEHALKHGAKNGLFVVTLGWFVDSVKKNVRLTESLYSLKSYGDNNMILDDFRLPRGYTNTGNCLPARIHETKHSHRAEEYLRFSDKEESNRNLDSTLSGCSIYVDPHISSELRNKVVESASREGASLVEQWFVGCNVSHVVTEGTSIQRYLGYSSNLITPLWILKTAKEKQVQRLVNMSVDLARQVGLMLEDVHNGLSEKEVVKQQVHDDHLGSKSDVSYEERQQIVNSAKNGVRSRRGRRMQTCQTPIRPITPNNLLDSICWSISEATSSATIYTDSFSAEDPNDNHTSIFFDAKGDAKDSDASFSNSTRPLTESEKSELVFKNHFLTILFPVDWFSEIGPSSRIFFNNNGFTCLQVLDHIHAFYQENMSSHEIEVAIHTDSRHADKLRSVYSSKETAERGYAMFKRTEFLGSRTSFEMLKRVSGDNNSNVYELLLRA 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01566 538 CDD BRCT_TopBP1_rpt2_like 49 127 - -
Vivi4g01566 538 ProSiteProfiles BRCT domain profile. 191 279 IPR001357 -
Vivi4g01566 538 Gene3D BRCT domain 48 139 IPR036420 -
Vivi4g01566 538 ProSiteProfiles BRCT domain profile. 45 137 IPR001357 -
Vivi4g01566 538 PANTHER BRCT DOMAIN DNA REPAIR PROTEIN-RELATED 3 538 - -
Vivi4g01566 538 SUPERFAMILY BRCT domain 47 138 IPR036420 -
Vivi4g01566 538 SMART BRCT_7 193 269 IPR001357 -
Vivi4g01566 538 SMART BRCT_7 47 127 IPR001357 -
Vivi4g01566 538 Pfam Family of unknown function (DUF6699) 383 522 IPR046522 -
Vivi4g01566 538 Pfam twin BRCT domain 53 119 IPR001357 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01566 Vivi-Chr4 61847283 61851712 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01566 49 160 Core DNA Replication Machinery Family AT1G77320 33.929 4.10e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01566 - - gmx:100815253 853.203