Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01562 ATGGCGGATGTTTTAGCTATGAAAGAGATTGAAGACAAAGCGGCGTCTCTCGGAATTGATTTGTCTACTATTGATCTCGATTCCATTCATCTCCCACACGGTGAAGACTGTGGCATATTGAGTGATGATGAAGAGGTTTTTCAAGAGGAGAATCTCGAGTTTGATACTGGCTTTGGCAACATTATAGTAGTGGATAATACTCCTGTTGTTACGAAGGAGAAATTTGCGAAGCTTGAAGGTGTTATTAGGAAGATTTTTAATCAGATGGGTGTTATTAAGGATGATGGCTTCTGGATGCCTGTTGATCCTGTCACTGAAAAGACAGTTGGTTACTGCTTCATTGAGTACAATACTCCTCAGGAAGCTGAGCTTGCGAAAGAGAAGGCCCAGGGATACAAATTGGATCATTCTCACATATTTACTGTTAGCATGTTTGATGATTTTGACCGGTTTATGAGAGTGCCGGATGAGTGGGCTCCTCCTCCGAGAAAGGAATATGCCCCAGGGGAAAATCTTCAACAATGGCTTACTGATGCTAAGGCCCGCGATCAGTTTGTGATTCGTGCTAGTTCAGATACGGAGGTTTTGTGGAATGATGCTAGGCATTTAAAGCCTGATCCTATTTATAAACGTGCAGTAAGTGGACATCATATTCCAATGGTGTGTTACGGATTTGGTGATGATGGAAGAGGAGCTATGGCTATGATGGGAGCTCTGATGCAGCAAGCTTGCCTTTCTAATCTCCATTTAAGTCAGGGTTTGATTTGGGATGGATTGGGATGCAAAGAATGGATGTTAGAACTCAAAATTCGTGTTCTGCACTGTCAGGTTCGCTACAGCGAACTCTGTGTTCGCTGCAGCGAATGTCTGCAGACTGCACTTTTGTGTTTCACTTAA 897 0.4303 MADVLAMKEIEDKAASLGIDLSTIDLDSIHLPHGEDCGILSDDEEVFQEENLEFDTGFGNIIVVDNTPVVTKEKFAKLEGVIRKIFNQMGVIKDDGFWMPVDPVTEKTVGYCFIEYNTPQEAELAKEKAQGYKLDHSHIFTVSMFDDFDRFMRVPDEWAPPPRKEYAPGENLQQWLTDAKARDQFVIRASSDTEVLWNDARHLKPDPIYKRAVSGHHIPMVCYGFGDDGRGAMAMMGALMQQACLSNLHLSQGLIWDGLGCKEWMLELKIRVLHCQVRYSELCVRCSECLQTALLCFT 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01562 298 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 60 147 IPR000504 GO:0003723
Vivi4g01562 298 CDD RRM_eIF3B 59 143 IPR034363 -
Vivi4g01562 298 Gene3D - 55 154 IPR012677 -
Vivi4g01562 298 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 EIF3 -RELATED 32 212 IPR011400 GO:0003723|GO:0003743|GO:0005852|GO:0006413|GO:0031369
Vivi4g01562 298 SUPERFAMILY RNA-binding domain, RBD 80 145 IPR035979 GO:0003676
Vivi4g01562 298 FunFam Eukaryotic translation initiation factor 3 subunit B 55 154 - -
Vivi4g01562 298 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 82 137 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01562 Vivi-Chr4 61790537 61802595 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01562 9 211 Eukaryotic Initiation Factors Gene Family AT5G27640 66.995 1.49e-96 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01562 K03253 - vvo:131597276 595.89