Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01549 ATGGATGGAAACAAAGACGATGCATTGAAATCCTTCAAAATCGGTAAACAAGCGTTGCAAAACGGCGATCGGAATCGCGCTTTGAAGTTTCTTAACAAAGCTCGCCGACTCGATCCCGCCCTTCCTGTTGACGATCTCTTGTCCACAATAGACAGAGATGAAGGGGATCGTCCTCCAGTAGCTTCCGACCCGCCTCCCTCCGATCAACCTTCCATACGACGAAGGTCTTCCGCTCCGGCGCCTGGACCTTCATCGTCTTCCTCAATATCATATAGCCAGGAACAAATTTCAATTATAAGAGAAATTAAGAGGAAGAAGAATTATTATGATATTTTAGGGTTGGAGAAGAGTTGCACTGTAGATGATGTCAGAAAATCTTATAGGAAGCTCTCTTTGAAGGTTCATCCCGACAAGAACAAGGCCCCTGGAGCGGAGGACGCGTTTAAGTTGGTCTCCAAGGCTTTTCAGTGTCTTGGTAATGAGGAGAGTAAGAGAAAGTATGATGTTTCTGGAGAAGATGAAGTGGTTTATGAAAGGCACGCTGCTGCCAGACCGGCTTCTGCTAGAGGTTTTAATGGTTACTATGAGGCTGATATTGATGCTGAGGAAATATTTAGGAATTTCTTCTTTGGAGGAATGGCTCCTGCTGCTAATTTCGGTGGGTTTAGTTTTGGAGGGCCGGGGATGGCTCATAGACAGCCTGCTGCTGATAATGGGTCTGGCGGATTCAATGTCCGAGCTTTGATTCAGGTGCTTCCTGTGCTTCTCATTTTGCTTATTAACTTTTTGCCTTCGTCAGATCCTGTCTACACTCTTTCGCAAAACTATCCCTATGAACACCGGCTTACTACACCTAAGGGTGTTAACTACTATGTTAAGTCCACAAAGTTTGAACAAGATTATCCCTTGGATAGCCGCGAACGTCTTACAATTGAGGAAAGAGTTGAGAGAGAATACTTTGGTATTCTTCGCCAGAATTGTCAGTTTGAGATGCAGCGACGCCAGTGGGGATATATCAGGGAAACGCCTCACTGTGATATGCTTAGGAAGTTTGATTCAGTCCGTTGA 1068 0.4513 MDGNKDDALKSFKIGKQALQNGDRNRALKFLNKARRLDPALPVDDLLSTIDRDEGDRPPVASDPPPSDQPSIRRRSSAPAPGPSSSSSISYSQEQISIIREIKRKKNYYDILGLEKSCTVDDVRKSYRKLSLKVHPDKNKAPGAEDAFKLVSKAFQCLGNEESKRKYDVSGEDEVVYERHAAARPASARGFNGYYEADIDAEEIFRNFFFGGMAPAANFGGFSFGGPGMAHRQPAADNGSGGFNVRALIQVLPVLLILLINFLPSSDPVYTLSQNYPYEHRLTTPKGVNYYVKSTKFEQDYPLDSRERLTIEERVEREYFGILRQNCQFEMQRRQWGYIRETPHCDMLRKFDSVR 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01549 355 ProSiteProfiles dnaJ domain profile. 107 171 IPR001623 -
Vivi4g01549 355 PRINTS DnaJ domain signature 127 142 IPR001623 -
Vivi4g01549 355 PRINTS DnaJ domain signature 109 127 IPR001623 -
Vivi4g01549 355 PRINTS DnaJ domain signature 143 163 IPR001623 -
Vivi4g01549 355 ProSiteProfiles TPR repeat profile. 8 41 IPR019734 GO:0005515
Vivi4g01549 355 Pfam DnaJ domain 107 168 IPR001623 -
Vivi4g01549 355 MobiDBLite consensus disorder prediction 42 91 - -
Vivi4g01549 355 SUPERFAMILY Chaperone J-domain 103 224 IPR036869 -
Vivi4g01549 355 ProSitePatterns Nt-dnaJ domain signature. 148 167 IPR018253 -
Vivi4g01549 355 CDD DnaJ 107 160 IPR001623 -
Vivi4g01549 355 SMART dnaj_3 106 163 IPR001623 -
Vivi4g01549 355 Pfam Domain of unknown function (DUF1977) 264 335 IPR015399 -
Vivi4g01549 355 Gene3D DnaJ domain 103 219 IPR036869 -
Vivi4g01549 355 PANTHER AT29763P-RELATED 1 350 - -
Vivi4g01549 355 MobiDBLite consensus disorder prediction 69 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01549 Vivi-Chr4 60958936 60960471 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01549 102 179 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 35.366 2.64e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01549 K09518 - gmx:100793797 505.753