Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g01528 ATGGGAGAAGCAACACAATCAGCCGAAACAGCAACCCCGACAACAAAAACAAAAACAGCAGGAACCTCTTCAAAGAGAACCGGTGGAGGTGGAGAAATCGTGGAGGTGGAAGGAGGTCACATTGTCCGCTCAACAGGCCGAAAAGACCGTCATAGCAAAGTCTGCACCGCGAAAGGTCCCCGTGACCGCCGTGTACGACTCTCCGCACACACCGCGATCCAATTCTACGACGTGCAGGACCGCTTGGGCTACGACCGGCCTAGTAAAGCAGTCGATTGGCTTATCAAAAAAGCAAAGTCCGCCATCGACGAACTCGCTCAACTTCCGGCATGGAACCCCACCGCAACCTGCTCTTCAACGCCACAACAGCAGCAGCAAACTAACGAGTTGTACCGCCGGCAGTCCCCGGTGGACAACAGTCCAGTAACCGCCTCCACCAGTCACCACCGCTCAGCGGCATTAGAGCGAAGAATACCGCAGGAACAATTTTCTTCCCAGCCATTAGAGATAGATTATAACAACAGTAGCGGGAAGCATGGTTTTCTTCATGGCTCATTGGATACTGACATTGCGGATACTATTAAATCCTTTTTTCCAGTTGAAACGCCCACGACGTCGTTTCACAGCTACCCACAACCGCCGGATTTGCTCTCCCGAACGGCCGCAACCACTCAGCAAGATCTCCGCCTCTCTTTGCAATCTTTTCAAGATCCTATTATGCTTCACCATCAAACTCAAAACCACAATGACCACCACCACAATCACCAAGTACTTTACGCCGGAAACTCCTCACTCGGTTTCGACGGTGGTGGAACCAACAACATGTGGTCTGAGCAGCAGCAGCATCAAGAGGAACATGACCATAGCAGATTGCATAGAATGATGGCTTGGAATGCTAATGCTAATGCTAATGTTAATGCTGCAGATGGTGGTAACAGTGGCCATGGCGCTGGATTTGTGTTCAGCACACCTGCGCCGGCTTTCGGTGGTTTTGGCCAGCTTTTTTCTCAGAGGGGACCCCTTCAGTCCAGTAACAATCCTTCAGTTCGTGCTTGGATAGATCCATCCATGGTGGCGACGGCGAATATGACCGATCACCACCATCACTATCTTTCGCCGATGATCCATCAGGCTTCTGCCTCAGGTGGTGGATTCTCCGGCTTTCGTATACCAACACGAATTCAAGGTGGCGAGGAACACGACGGCGTATCTGATAAACCGTCCTCTGCTTCCTCTGATTCTCGCCATTGA 1251 0.514 MGEATQSAETATPTTKTKTAGTSSKRTGGGGEIVEVEGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDELAQLPAWNPTATCSSTPQQQQQTNELYRRQSPVDNSPVTASTSHHRSAALERRIPQEQFSSQPLEIDYNNSSGKHGFLHGSLDTDIADTIKSFFPVETPTTSFHSYPQPPDLLSRTAATTQQDLRLSLQSFQDPIMLHHQTQNHNDHHHNHQVLYAGNSSLGFDGGGTNNMWSEQQQHQEEHDHSRLHRMMAWNANANANVNAADGGNSGHGAGFVFSTPAPAFGGFGQLFSQRGPLQSSNNPSVRAWIDPSMVATANMTDHHHHYLSPMIHQASASGGGFSGFRIPTRIQGGEEHDGVSDKPSSASSDSRH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g01528 416 MobiDBLite consensus disorder prediction 114 149 - -
Vivi4g01528 416 MobiDBLite consensus disorder prediction 1 26 - -
Vivi4g01528 416 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 7 343 IPR005333 GO:0003700
Vivi4g01528 416 MobiDBLite consensus disorder prediction 114 166 - -
Vivi4g01528 416 MobiDBLite consensus disorder prediction 1 33 - -
Vivi4g01528 416 MobiDBLite consensus disorder prediction 43 62 - -
Vivi4g01528 416 MobiDBLite consensus disorder prediction 394 416 - -
Vivi4g01528 416 MobiDBLite consensus disorder prediction 382 416 - -
Vivi4g01528 416 ProSiteProfiles TCP domain profile. 47 105 IPR017887 -
Vivi4g01528 416 Pfam TCP family transcription factor 46 152 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g01528 Vivi-Chr4 59484950 59487725 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g01528 13 416 TCP Transcription Factor Family AT1G53230 46.698 7.27e-97 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vivi4g01528 TCP 6.4e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g01528 - - mtr:25502512 580.867